View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_7 (Length: 503)
Name: NF1970_low_7
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 293 - 485
Target Start/End: Original strand, 5929264 - 5929456
Alignment:
| Q |
293 |
aagactacacatttagtcatactctctccacactatattannnnnnnaccaccctttctctctccccactcacccatcatcaccaacaacatcacaaccg |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
5929264 |
aagactacacatttagtcatactctctccacactatattatttttttaccaccctttctctctccccactcacccatcatcaccagcaacatcacagcca |
5929363 |
T |
|
| Q |
393 |
catccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccatttc |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5929364 |
catccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaacttcaccactcttatcaaccatttc |
5929456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 5928910 - 5929171
Alignment:
| Q |
1 |
ctacgcattttagtagatcggcttgatagcctaaaagctaaaaggnnnnnnn---gtatggttcgtgaccttgtcattttaactagtcttttaaaaaagt |
97 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
5928910 |
ctacacattttagtagatcggcttgatagcctaaaagctaaaaggttttttttttgtatggtttgtgaccttgtcattttaaccagacttttaaaaaagt |
5929009 |
T |
|
| Q |
98 |
ttaagtgtcctctatttnnnnnnngtcgaacctagccttaaggtctagtctgatctattcccaccc-------ccaatgacaaannnnnnnn--gaaata |
188 |
Q |
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||||||||||||||| | || |||||||||||||| |||||||||||||||||| ||||| ||||||| ||| |||||| |
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| T |
5929010 |
ttaagtgtcctctatctaaaaaaagttgaacctagccttaaagtctagtctgatctattctcacccttaggtaccaatgataaaaaaaaaaattgaaata |
5929109 |
T |
|
| Q |
189 |
caa----aatagatcaaaaggaggatgtccttgcttgatatgagaaaaagtaactttatatg |
246 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5929110 |
caatgtaaatagatcaaaaggaggatgtccttgcttgatatgagaaaaagtaactttatatg |
5929171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 293 - 485
Target Start/End: Original strand, 42843958 - 42844150
Alignment:
| Q |
293 |
aagactacacatttagtcatactctctccacactatattannnnnnnaccaccctttctctctccccactcacccatcatcaccaacaacatcacaaccg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42843958 |
aagactacacatttagtcatactctctccacactatattatttttttaccaccctttctctctccccactcacccatcatcaccagcaacatcacaaccg |
42844057 |
T |
|
| Q |
393 |
catccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccatttc |
485 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42844058 |
catccctcttctctatcagctaccaacacattttctctcaacagtagtatgttctaacaacactccaacttcaccactcttatcaaccatttc |
42844150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 46098190 - 46098095
Alignment:
| Q |
293 |
aagactacacatttagtcatactctctccacactatattannnnnnnaccaccctttctctctccccactcacccatcatcaccaacaacatcacaa |
389 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
46098190 |
aagactacacttttcatcttactctctccacactagattatctttttaccaccctt-ctctctccccactcacccatcatcaccagcaacatcacaa |
46098095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 293 - 485
Target Start/End: Complemental strand, 9124371 - 9124180
Alignment:
| Q |
293 |
aagactacacatttagtcatactctctccacactatattannnnnnnaccaccctttctctctccccactcacccatcatcaccaacaacatcacaaccg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9124371 |
aagactacacatttagtcatactctctccacactatattatttttt-accaccctttctctctccccactcacccatcatcaccggcaacatcacaaccg |
9124273 |
T |
|
| Q |
393 |
catccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccatttc |
485 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
9124272 |
catccctcttctctattagctaccaacacattttctctcaacaacattatgttctaacaacagtccaacttcaccactcttatcaaccatttc |
9124180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 293 - 485
Target Start/End: Complemental strand, 2601206 - 2601012
Alignment:
| Q |
293 |
aagactacacatttagtcatactctctccacactatattannnnnnn--accaccctttctctctccccactcacccatcatcaccaacaacatcacaac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2601206 |
aagactacacatttagtcatactctctccacactatattatttttttttaccaccctttctctctccccactcacccatcatcaccggcaacatcacaac |
2601107 |
T |
|
| Q |
391 |
cgcatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaatttcaccactcttatcaaccatttc |
485 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
2601106 |
cacatccctcttctctatcagctaccaacacattttctctcaacagcagtatgttttaacaacactccaacttcaccactcttatcatccatttc |
2601012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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