View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_8 (Length: 477)
Name: NF1970_low_8
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 1105696 - 1106142
Alignment:
| Q |
20 |
actattgtaatggatagaaatattacttgtactataccttcgtttttgttgttgtttcttactagtactatataattttggtctaggtgatgagataagt |
119 |
Q |
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| T |
1105696 |
actattgtaatggatagaaatattacttgtgcta--ccttcgttatt-ttgttgtttcttactagtactatataactttggtctaggtgatgagataagt |
1105792 |
T |
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| Q |
120 |
atgaacttgtacgttgtagctactgcatctcttggtcgtttatgttggacttgtaactcaactgacccatatgaacccaggcatatactccagtattttg |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1105793 |
atgaacttgtaagttgtagctactgcatctcttggtcgtttatgttggacttacaactcaactgacccatatgaacctaggcatatactccagtattttg |
1105892 |
T |
|
| Q |
220 |
gttgacggaagtttgattctcctgttctgttcaggaatctttaagggctttcaggattatcatatcattagattttttacgctacagattaatg--nnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1105893 |
gttgacggaagtttgattctcctgttctgttcaggaatcttaaagggctttcaggattatcatatcattagattttttacgctacagattaatgtttttt |
1105992 |
T |
|
| Q |
318 |
nnnnaataaaaccatcccaaaacacataagaacacagtgtgcaacctccatcaacaacctaacacagtccctttattagccacaacctatttccaccatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1105993 |
ttttaataaaaccatcccaaaacacataagaacacagtgtgcaacctccatcaacaacctaacacagtccgtttattagccacaacctatttccaccatc |
1106092 |
T |
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| Q |
418 |
attatcactccnnnnnnnnccaaaggaaaattattgtgccaccatctgtg |
467 |
Q |
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| T |
1106093 |
attatcactccaaaaaaaaccaaaggaaaattaccgtgccaccatctgtg |
1106142 |
T |
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