View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_9 (Length: 470)
Name: NF1970_low_9
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 36151198 - 36151640
Alignment:
| Q |
18 |
ggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151198 |
ggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaa |
36151297 |
T |
|
| Q |
118 |
ccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcactcaagtaagtatggctaccggagcagtcaatgct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
36151298 |
ccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgct |
36151397 |
T |
|
| Q |
218 |
accgttaccggtactgtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151398 |
accgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccag |
36151497 |
T |
|
| Q |
318 |
ctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151498 |
ctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtga |
36151597 |
T |
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| Q |
418 |
tggcaaggatttacctgctgatgtttctgctgcagggtctgtg |
460 |
Q |
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| T |
36151598 |
tggcaaggatttacctgctgatatttctgctgcagggtctgtg |
36151640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 36154584 - 36155026
Alignment:
| Q |
18 |
ggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154584 |
ggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaa |
36154683 |
T |
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| Q |
118 |
ccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcactcaagtaagtatggctaccggagcagtcaatgct |
217 |
Q |
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| T |
36154684 |
ccctgttcaaacacaagccggtgatgatgctaggcttcaactgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgct |
36154783 |
T |
|
| Q |
218 |
accgttaccggtactgtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154784 |
accgttaccggtactgtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccag |
36154883 |
T |
|
| Q |
318 |
ctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154884 |
ctctggctcctgcaccagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtga |
36154983 |
T |
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| Q |
418 |
tggcaaggatttacctgctgatgtttctgctgcagggtctgtg |
460 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36154984 |
tggtaaggatttacctgctgatgtttctgctgcagggtctgtg |
36155026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 5273708 - 5274006
Alignment:
| Q |
20 |
ttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaacc |
119 |
Q |
| |
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||||| || ||||||| ||| ||||| ||||| ||||| ||||| || ||| | ||| | |||||| | || || || |||||||| ||||||||||||| |
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| T |
5273708 |
ttccttaattccctcagtgacagacacaaagtagaactgttacaattccacacactttcctcattcatctcaatctcgaacttcgacaccttaaccaacc |
5273807 |
T |
|
| Q |
120 |
ctgttcaaacacaagccggtgatgatgcta---ggcttcaactgaacgtcactacttatggtggcactcaagtaagtatggctaccggagcagtcaatgc |
216 |
Q |
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| ||||||||||||||||||||||| || | |||| ||||| || || || |||| ||| || | || || || ||| | || || | || ||||| |
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| T |
5273808 |
cggttcaaacacaagccggtgatgacgccaaaaggctacaacttaatgtaaccacttctggcggtagccatgtcagcatgacaactggcacggttaatgc |
5273907 |
T |
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| Q |
217 |
taccgttaccggtactgtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctcc |
315 |
Q |
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|||||||| || || ||||| || |||| |||||| ||||| ||||| ||||| | ||| ||| | |||||||||||||| ||||| ||||| ||||| |
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| T |
5273908 |
aaccgttactggaacagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatcttgtgcttcctgctaaagctcc |
5274006 |
T |
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