View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19710_high_3 (Length: 535)
Name: NF19710_high_3
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Complemental strand, 27985885 - 27985442
Alignment:
| Q |
7 |
accaactagtttatttaatgcttgttggtaccccagtcccaaatctgaagcaagtgaatgcagacgtgactcatgcatcaagaataaaaaatgctacatt |
106 |
Q |
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| T |
27985885 |
accaactagtttatttaatgcttgttggtaccccagtcccaaatctgaagcaagtgaatgcagacgtgactcat----caagaataaaaaatgctacatt |
27985790 |
T |
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| Q |
107 |
ttacatatcttgatcatatttttaattccactcaaccaaattccatgccacctccaccatcttctcaaattcacctaccatttccaacccagagacaaga |
206 |
Q |
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| T |
27985789 |
ttacatatcttgatcatatttttaattccagtcaaccaaattccatgccacctccaccatcttctcaaattcacctaccatttccaacccagagacaaga |
27985690 |
T |
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| Q |
207 |
ttttacatatcttggtcctattttgacgagcgagcatgcacaggtacatccatatgcacattcgcatgtacatgcgaaaccaagacaaagtgatgtgtat |
306 |
Q |
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| T |
27985689 |
ttttacatatc--ggtcctattttgacaagggagcatgcacaggtacatccaaatgcacattcgcatgtacatgcgaaaccaagacaaagtgatgtgtat |
27985592 |
T |
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| Q |
307 |
gccttggaaaggttctcacattttcaagagaatatgtaaccaattttaaccaacgtttcacttccacctcagatttcttgcctctaaagcttccaaacaa |
406 |
Q |
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| T |
27985591 |
gccttggaaaggttctcacattttcaagagaatatgtaaccaattttaaccaacgtttcacttccacctcagatttcttgcctctaaaacttccaaacaa |
27985492 |
T |
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| Q |
407 |
c-atatcaggtttgaaaaatgtaacttcagatgtcaggaagatttttaacg |
456 |
Q |
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| T |
27985491 |
caatatcaggtttg-aaaatgtaactttagatgtcaggaagatttttaacg |
27985442 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 10506756 - 10506826
Alignment:
| Q |
178 |
cacctaccatttccaacccagagacaagattttacatatcttggtcctattttgacgagcgagcatgcaca |
248 |
Q |
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| T |
10506756 |
cacccaccatttccaacacataaacctgattttacatatcttggtcctactttgaggagggaacatgcaca |
10506826 |
T |
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