View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19710_high_5 (Length: 364)
Name: NF19710_high_5
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_high_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 24419403 - 24419052
Alignment:
| Q |
13 |
aatatatactactgctgatagatggttctcnnnnnnntaccccaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttg |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24419403 |
aatatatactactgctgatagatggttctcaaaaaaataccctaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagctttg |
24419304 |
T |
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| Q |
113 |
gagataaatcttttcagattctgttatagaacaagctatgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattat |
212 |
Q |
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| T |
24419303 |
gagataaatcttttcagattctgttatagaacaagctatgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattat |
24419204 |
T |
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| Q |
213 |
taggagctataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctct |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419203 |
taggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctct |
24419104 |
T |
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| Q |
313 |
aaggatttttagctttgcttgctttcttgtcacaatggttggatttgttgga |
364 |
Q |
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| T |
24419103 |
aaggatttttagctttgcttgctttcttgtcacaatggttggatttgttgga |
24419052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 24415122 - 24415473
Alignment:
| Q |
13 |
aatatatactactgctgatagatggttctcnnnnnnntaccccaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttg |
112 |
Q |
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| T |
24415122 |
aatatatagtactgctgatagatggttcacaaaaaaataccccaacagtggctttgtgaacaatttccacaaagtgaaacttcctctattaccttctttt |
24415221 |
T |
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| Q |
113 |
gagataaatcttttcagattctgttatagaacaagctatgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattat |
212 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
24415222 |
gagataaaccttttcagattctgttttagaacaagctatgtgatttcaaccactggatttgcaattttatttccttacttcaactcagttctaggattat |
24415321 |
T |
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| Q |
213 |
taggagctataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctct |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24415322 |
taggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgttct |
24415421 |
T |
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| Q |
313 |
aaggatttttagctttgcttgctttcttgtcacaatggttggatttgttgga |
364 |
Q |
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| T |
24415422 |
aaggatttttagctttgcttgcttccttgtcaccatggttggatttgttgga |
24415473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 64 - 363
Target Start/End: Original strand, 24402357 - 24402656
Alignment:
| Q |
64 |
ctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagctatgtgatttcaacc |
163 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||| | ||| |||||||| |||||||| || |||| | |||| || ||| ||||||||| |
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| T |
24402357 |
ctttgtgaatgatttccacatagtgaaacttcctctattacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaacc |
24402456 |
T |
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| Q |
164 |
actggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatttcccagttgaaatgt |
263 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402457 |
gttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgt |
24402556 |
T |
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| Q |
264 |
actttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttcttgtcacaatggttggatttgttgg |
363 |
Q |
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||||||||||||| ||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24402557 |
actttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttcttgtcacaatagttggatttgttgg |
24402656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 59 - 349
Target Start/End: Original strand, 24380134 - 24380424
Alignment:
| Q |
59 |
agtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagctatgtgattt |
158 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
24380134 |
agtggctttgtgaatgatttccacaaagtgaaacttcctctattaccttcttttaagataaatcttttcaggttctgtttcagaacaagctatgtgattt |
24380233 |
T |
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| Q |
159 |
caaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatttcccagttga |
258 |
Q |
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| T |
24380234 |
caaccactggacttgcaattttctttccttacttcaatcaaattctaggagtactaggaggcataaatttctggccactggctatatatttcccagttga |
24380333 |
T |
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| Q |
259 |
aatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttcttgtcacaatg |
349 |
Q |
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| T |
24380334 |
aatgtactttgtacagaagaaaattggagcttggactaaaaaatggattgttctcaggatatttagctttgcttgctttcttgttacaatg |
24380424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 339
Target Start/End: Original strand, 42362982 - 42363172
Alignment:
| Q |
149 |
tatgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatt |
248 |
Q |
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||||||||||| || |||||||| ||||| | |||||||||||||| |||| ||||| | ||||||| || || ||||| ||| | ||||||| |
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| T |
42362982 |
tatgtgatttccacaactggacttgcaatcatgtttccttacttcaatgaagttttaggagtcctaggagcattaggcttttggcctttgaccatatatt |
42363081 |
T |
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| Q |
249 |
tcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttct |
339 |
Q |
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|||| || || ||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||| ||| |||| ||||||||||| |||| |||| |
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| T |
42363082 |
tcccggtagagatgtattttgtacagaataaaattgaagcttggtctacaaaatggattgttcttaggacttttagctttgtttgccttct |
42363172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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