View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19710_low_1 (Length: 685)

Name: NF19710_low_1
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19710_low_1
NF19710_low_1
[»] chr5 (29 HSPs)
chr5 (17-667)||(20028502-20029173)
chr5 (623-663)||(12521542-12521582)
chr5 (619-667)||(18704048-18704096)
chr5 (619-667)||(18906352-18906400)
chr5 (619-664)||(19138732-19138779)
chr5 (619-667)||(32408604-32408652)
chr5 (631-667)||(35963263-35963299)
chr5 (619-663)||(37588376-37588420)
chr5 (619-667)||(38104869-38104917)
chr5 (619-666)||(1084134-1084181)
chr5 (619-666)||(12242723-12242770)
chr5 (620-662)||(6183455-6183497)
chr5 (619-661)||(32172663-32172705)
chr5 (629-663)||(37690652-37690686)
chr5 (633-667)||(39607510-39607544)
chr5 (634-667)||(5951980-5952013)
chr5 (622-663)||(19460580-19460621)
chr5 (619-660)||(35553207-35553248)
chr5 (622-662)||(985626-985666)
chr5 (623-663)||(2880563-2880603)
chr5 (619-667)||(8651365-8651412)
chr5 (619-667)||(11707065-11707113)
chr5 (619-663)||(17258899-17258943)
chr5 (619-667)||(33533551-33533599)
chr5 (619-667)||(36639532-36639580)
chr5 (619-663)||(37526215-37526259)
chr5 (619-663)||(37611231-37611275)
chr5 (619-663)||(37787961-37788005)
chr5 (619-663)||(40205090-40205134)
[»] chr3 (26 HSPs)
chr3 (23-554)||(13370462-13371001)
chr3 (560-667)||(13371056-13371175)
chr3 (21-122)||(52614949-52615048)
chr3 (629-667)||(5292532-5292570)
chr3 (619-664)||(26542547-26542592)
chr3 (619-663)||(14548737-14548781)
chr3 (619-667)||(27792882-27792930)
chr3 (619-667)||(54180792-54180840)
chr3 (619-662)||(2071066-2071109)
chr3 (637-667)||(21862187-21862217)
chr3 (637-667)||(45432951-45432981)
chr3 (621-667)||(54137638-54137684)
chr3 (619-664)||(20502083-20502128)
chr3 (622-659)||(23315639-23315676)
chr3 (619-664)||(41633370-41633415)
chr3 (622-667)||(49546496-49546541)
chr3 (619-663)||(9279342-9279386)
chr3 (619-667)||(12985357-12985405)
chr3 (619-667)||(23785265-23785313)
chr3 (619-667)||(23793594-23793642)
chr3 (619-663)||(24887299-24887343)
chr3 (619-667)||(34414796-34414844)
chr3 (623-667)||(36200110-36200154)
chr3 (619-667)||(37273144-37273192)
chr3 (639-667)||(38462311-38462339)
chr3 (623-667)||(52614181-52614225)
[»] scaffold0089 (2 HSPs)
scaffold0089 (17-554)||(33813-34358)
scaffold0089 (560-667)||(33639-33758)
[»] chr6 (27 HSPs)
chr6 (17-554)||(20512830-20513375)
chr6 (560-667)||(20512656-20512775)
chr6 (132-201)||(6637570-6637641)
chr6 (624-667)||(2460163-2460206)
chr6 (634-667)||(6536972-6537005)
chr6 (622-667)||(34939526-34939571)
chr6 (627-667)||(7785756-7785796)
chr6 (611-667)||(10154223-10154279)
chr6 (637-667)||(7931801-7931831)
chr6 (623-661)||(9833128-9833166)
chr6 (625-663)||(13908479-13908517)
chr6 (619-653)||(19275662-19275696)
chr6 (637-667)||(27909650-27909680)
chr6 (619-665)||(28088236-28088282)
chr6 (619-661)||(32387073-32387115)
chr6 (619-664)||(1401119-1401164)
chr6 (619-664)||(24836217-24836262)
chr6 (619-668)||(33887840-33887889)
chr6 (619-659)||(2205610-2205650)
chr6 (619-663)||(4420653-4420697)
chr6 (635-667)||(9027604-9027636)
chr6 (623-667)||(27998428-27998472)
chr6 (619-663)||(30533799-30533843)
chr6 (619-667)||(31583689-31583737)
chr6 (623-663)||(32578002-32578042)
chr6 (627-667)||(34404107-34404147)
chr6 (620-664)||(34939755-34939799)
[»] chr7 (23 HSPs)
chr7 (244-341)||(36815358-36815457)
chr7 (365-414)||(36815473-36815522)
chr7 (479-524)||(36815597-36815642)
chr7 (619-667)||(4966166-4966214)
chr7 (619-667)||(6263376-6263423)
chr7 (619-667)||(7244690-7244738)
chr7 (619-663)||(12792579-12792623)
chr7 (623-663)||(12792709-12792749)
chr7 (619-667)||(24363613-24363661)
chr7 (619-663)||(26935573-26935617)
chr7 (619-666)||(45859539-45859586)
chr7 (619-661)||(12792642-12792684)
chr7 (619-661)||(39505966-39506008)
chr7 (622-663)||(40428568-40428609)
chr7 (619-663)||(12792514-12792558)
chr7 (619-667)||(25596043-25596091)
chr7 (619-663)||(27626139-27626183)
chr7 (623-663)||(28165105-28165145)
chr7 (622-666)||(29286804-29286848)
chr7 (619-663)||(44151496-44151540)
chr7 (619-667)||(44821969-44822017)
chr7 (627-667)||(46082054-46082094)
chr7 (619-663)||(46104583-46104627)
[»] chr8 (24 HSPs)
chr8 (619-663)||(11795102-11795146)
chr8 (619-667)||(28769351-28769399)
chr8 (612-667)||(25869278-25869333)
chr8 (621-663)||(42370377-42370419)
chr8 (619-664)||(4762519-4762564)
chr8 (619-663)||(39561557-39561601)
chr8 (619-667)||(42215094-42215142)
chr8 (636-667)||(6950349-6950380)
chr8 (623-662)||(39881769-39881808)
chr8 (623-661)||(4390070-4390108)
chr8 (618-668)||(13000435-13000485)
chr8 (637-667)||(30918141-30918171)
chr8 (619-657)||(33553250-33553288)
chr8 (637-667)||(41606915-41606945)
chr8 (633-666)||(7039834-7039867)
chr8 (634-667)||(11000588-11000621)
chr8 (619-660)||(11494156-11494197)
chr8 (619-663)||(7918789-7918833)
chr8 (619-667)||(11569469-11569517)
chr8 (619-663)||(14929154-14929198)
chr8 (619-667)||(26479795-26479843)
chr8 (619-659)||(27754414-27754454)
chr8 (619-667)||(30277257-30277305)
chr8 (619-667)||(44236835-44236883)
[»] chr1 (36 HSPs)
chr1 (619-663)||(5047156-5047200)
chr1 (619-667)||(11893605-11893653)
chr1 (619-666)||(35590905-35590952)
chr1 (619-667)||(16322859-16322907)
chr1 (619-663)||(37593700-37593744)
chr1 (634-667)||(48748327-48748360)
chr1 (619-667)||(10199420-10199468)
chr1 (619-667)||(12564511-12564559)
chr1 (623-667)||(27140492-27140536)
chr1 (619-667)||(27963382-27963430)
chr1 (619-667)||(28077081-28077129)
chr1 (619-667)||(34290246-34290294)
chr1 (619-667)||(45205078-45205126)
chr1 (623-667)||(47877123-47877167)
chr1 (619-661)||(5150947-5150989)
chr1 (623-665)||(23402045-23402087)
chr1 (620-665)||(26461955-26462000)
chr1 (634-667)||(43954057-43954090)
chr1 (625-666)||(49175635-49175676)
chr1 (623-667)||(3924638-3924682)
chr1 (639-667)||(4549260-4549288)
chr1 (619-667)||(5592697-5592745)
chr1 (619-667)||(6279409-6279457)
chr1 (619-667)||(6981502-6981550)
chr1 (619-663)||(7262534-7262578)
chr1 (619-667)||(11211128-11211176)
chr1 (623-667)||(12477299-12477343)
chr1 (619-667)||(14629978-14630026)
chr1 (619-663)||(23373328-23373372)
chr1 (619-667)||(26779937-26779985)
chr1 (623-667)||(26916215-26916259)
chr1 (619-663)||(35179149-35179193)
chr1 (639-667)||(39347979-39348007)
chr1 (619-663)||(43332494-43332538)
chr1 (628-664)||(44815318-44815354)
chr1 (619-667)||(47598433-47598481)
[»] chr4 (30 HSPs)
chr4 (623-667)||(2592321-2592365)
chr4 (624-667)||(27123364-27123407)
chr4 (619-663)||(11802544-11802588)
chr4 (619-667)||(18628555-18628603)
chr4 (619-667)||(23819099-23819147)
chr4 (619-667)||(29263380-29263428)
chr4 (619-667)||(37575948-37575996)
chr4 (619-663)||(45927359-45927403)
chr4 (619-667)||(46110213-46110261)
chr4 (619-667)||(53673670-53673718)
chr4 (619-662)||(47800633-47800676)
chr4 (637-667)||(5131262-5131292)
chr4 (617-667)||(35743290-35743340)
chr4 (622-663)||(14011247-14011288)
chr4 (619-664)||(35064865-35064910)
chr4 (619-664)||(43412371-43412416)
chr4 (619-663)||(825506-825550)
chr4 (611-663)||(6364151-6364203)
chr4 (623-667)||(6428032-6428076)
chr4 (619-667)||(7694022-7694070)
chr4 (619-667)||(17884078-17884126)
chr4 (623-663)||(19429723-19429763)
chr4 (619-663)||(21157778-21157822)
chr4 (619-667)||(28300311-28300359)
chr4 (619-655)||(28615344-28615380)
chr4 (619-663)||(32066102-32066146)
chr4 (619-667)||(34398697-34398745)
chr4 (639-667)||(43824313-43824341)
chr4 (619-667)||(49219149-49219197)
chr4 (619-667)||(55547056-55547104)
[»] chr2 (22 HSPs)
chr2 (619-663)||(7871653-7871697)
chr2 (619-667)||(42817388-42817436)
chr2 (623-663)||(1647250-1647290)
chr2 (619-667)||(6227761-6227809)
chr2 (619-667)||(35379028-35379076)
chr2 (623-661)||(40837453-40837491)
chr2 (619-661)||(43985021-43985063)
chr2 (619-668)||(8187464-8187513)
chr2 (634-663)||(11063218-11063247)
chr2 (618-667)||(11488286-11488335)
chr2 (619-664)||(15977995-15978040)
chr2 (619-664)||(41817178-41817223)
chr2 (619-663)||(1939348-1939392)
chr2 (611-663)||(15866684-15866736)
chr2 (619-667)||(16867749-16867797)
chr2 (619-663)||(24098112-24098156)
chr2 (619-667)||(27288641-27288689)
chr2 (619-663)||(34652052-34652096)
chr2 (619-667)||(35462769-35462817)
chr2 (619-667)||(40158728-40158776)
chr2 (619-667)||(43141881-43141929)
chr2 (619-663)||(43205319-43205363)
[»] scaffold0654 (1 HSPs)
scaffold0654 (623-663)||(6653-6693)
[»] scaffold0014 (1 HSPs)
scaffold0014 (623-663)||(116572-116612)


Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 17 - 667
Target Start/End: Complemental strand, 20029173 - 20028502
Alignment:
Q  17 atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20029173 atcgcacctaatacgatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc 20029074  T
Q  117 acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20029073 acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 20028974  T
Q  217 gtggctatttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtat--atatgtccttcctatattatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20028973 gtggctatttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtatatatatgtccttcctatattatgt 20028874  T
Q  315 cattattcataatcataccaacgtgactatttcatgcacctgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 414  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20028873 cattattcataatcataccaacgtgactatttcatgcacatgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 20028774  T
Q  415 ta-------taagtattaactagctaaaataatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctca 507  Q
    ||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20028773 tataagtattaagtattaactagctaaaataatactacttaagctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctca 20028674  T
Q  508 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaactactttatgtcagatattagcttataaaaacagggccttgtttggata---- 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||        
T  20028673 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaactactttatgtcagagattagcttattaaaacagggccttgtttggataaact 20028574  T
Q  604 --------aaccacttaagcaactttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20028573 actttattaaccacttaagcaactttcataagctattatgaagagcttatagaaataagctgaaaacaactt 20028502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 12521542 - 12521582
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12521542 ataagctattttgaagagcttatggaaataagctgaaaaca 12521582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 18704096 - 18704048
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||    
T  18704096 tttcataagctattacaaagatcttatggaaataagctgaaaacaactt 18704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 18906352 - 18906400
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||| ||||||| |||||||||||||||||||||    
T  18906352 tttcataagctatcttgaaaagcttatcgaaataagctgaaaacaactt 18906400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 19138779 - 19138732
Alignment:
Q  619 tttcataagctattat--gaagagcttatggaaataagctgaaaacaa 664  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||    
T  19138779 tttcataagctattatatggagagcttatggaaataagctgaaaacaa 19138732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 32408652 - 32408604
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||||||||||||||||||||| |||| ||||||    
T  32408652 tttcataagctatcctgaagagcttatggaaataagcagaaaccaactt 32408604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 667
Target Start/End: Original strand, 35963263 - 35963299
Alignment:
Q  631 ttatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35963263 ttatgaaaagcttatggaaataagctgaaaacaactt 35963299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 37588420 - 37588376
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||| |||| || |||||||||||||||||||||||||||    
T  37588420 tttcataagttattctggagagcttatggaaataagctgaaaaca 37588376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 38104917 - 38104869
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |  |||||||||||||||||||||||||||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaacaactt 38104869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 666
Target Start/End: Complemental strand, 1084181 - 1084134
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    ||||||||  ||| |||||||||||||||||||||||| |||||||||    
T  1084181 tttcataacatatcatgaagagcttatggaaataagctaaaaacaact 1084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 666
Target Start/End: Complemental strand, 12242770 - 12242723
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    |||||||||||||  || ||||||||||||| ||||||||||||||||    
T  12242770 tttcataagctatcttggagagcttatggaagtaagctgaaaacaact 12242723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 662
Target Start/End: Original strand, 6183455 - 6183497
Alignment:
Q  620 ttcataagctattatgaagagcttatggaaataagctgaaaac 662  Q
    |||||||||| || || ||||||||||||||||||||||||||    
T  6183455 ttcataagctgttttggagagcttatggaaataagctgaaaac 6183497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 32172663 - 32172705
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  32172663 tttcataagctatcatgaagaactaatggaaataagctgaaaa 32172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 663
Target Start/End: Complemental strand, 37690686 - 37690652
Alignment:
Q  629 tattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||| |||||||||||||||||||||||||||    
T  37690686 tattatggagagcttatggaaataagctgaaaaca 37690652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 633 - 667
Target Start/End: Original strand, 39607510 - 39607544
Alignment:
Q  633 atgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||| |||||||||||||||||||||    
T  39607510 atgaagagcttatcgaaataagctgaaaacaactt 39607544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 667
Target Start/End: Complemental strand, 5952013 - 5951980
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||| |||||||||||||||||||||||||||||    
T  5952013 tgaatagcttatggaaataagctgaaaacaactt 5951980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 663
Target Start/End: Original strand, 19460580 - 19460621
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||| ||| ||||||||||||||| |||||||||||    
T  19460580 cataagctatcatggagagcttatggaaatgagctgaaaaca 19460621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 660
Target Start/End: Complemental strand, 35553248 - 35553207
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaa 660  Q
    ||||||| |||||| || ||||||||||||||||||||||||    
T  35553248 tttcatacgctattctggagagcttatggaaataagctgaaa 35553207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 662
Target Start/End: Original strand, 985626 - 985666
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaac 662  Q
    |||||||||| ||||||||  ||||||||||||||||||||    
T  985626 cataagctatcatgaagagactatggaaataagctgaaaac 985666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 2880603 - 2880563
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  2880603 ataagctattcagaagagtttatggaaataagctgaaaaca 2880563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 8651412 - 8651365
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||||||||    
T  8651412 tttcataagctattctgg-gagcttatggaaatatgctgaaaacaactt 8651365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 11707065 - 11707113
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || ||||||| || ||||||||||||||||||||    
T  11707065 tttcataagctatcttgtagagcttttgaaaataagctgaaaacaactt 11707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 17258943 - 17258899
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||    
T  17258943 tttcataaactatcctgaagagcttatgaaaataagctgaaaaca 17258899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 33533599 - 33533551
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||| |||||||  || |||||||||||||||||| ||||||||||||    
T  33533599 tttcacaagctatcttggagagcttatggaaataagttgaaaacaactt 33533551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 36639532 - 36639580
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  ||||||||||||| |||||||  |||||||||||    
T  36639532 tttcataagctatcttgaagagcttatgaaaataagaggaaaacaactt 36639580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 37526259 - 37526215
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||| | || || |||||||||||||||||||||||||||    
T  37526259 tttcataagttgttctggagagcttatggaaataagctgaaaaca 37526215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 37611275 - 37611231
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||||||||||||| |||||||||    
T  37611275 tttcataagctatcttggagagcttatggaaataacctgaaaaca 37611231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 37788005 - 37787961
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||||||||||||| |||||||||    
T  37788005 tttcataagctatcttggagagcttatggaaataacctgaaaaca 37787961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 40205134 - 40205090
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||||| |||||||||||||||||    
T  40205134 tttcataagctatcctggagagcttatagaaataagctgaaaaca 40205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 23 - 554
Target Start/End: Original strand, 13370462 - 13371001
Alignment:
Q  23 cctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagcacagtt 122  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13370462 cctaatacgatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagcacagtt 13370560  T
Q  123 agaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctcgtggct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13370561 agaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctcgtggct 13370660  T
Q  223 atttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgagg--tatatatgtccttcctatattatgtcattat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  13370661 atttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtatatatatgtccttcctatattatgtcattat 13370760  T
Q  321 tcataatcataccaacgtgactatttcatgcacctgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatagta---- 416  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  13370761 tcataatcataccaacgtgactatttcatgcacatgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatagtataag 13370860  T
Q  417 ---taagtattaactagctaaaataatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctcatggtag 513  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13370861 tattaagtattaactagctaaaatgatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctcatggtag 13370960  T
Q  514 agtttcaatggtgaacaacacaatatgaggcaatggtagaa 554  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13370961 agtttcaatggtgaacaacacaatatgaggcaatggtagaa 13371001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 560 - 667
Target Start/End: Original strand, 13371056 - 13371175
Alignment:
Q  560 ttatgtcagatattagcttataaaaacagggccttgtttggataaac------------cacttaagcaactttcataagctattatgaagagcttatgg 647  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  13371056 ttatgtcagatattagcttataaaaacacggccttgtttggataaactactttattaaccacttaagcaactttcataagctattatgaagagcttatgg 13371155  T
Q  648 aaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||    
T  13371156 aaataagctgaaaacaactt 13371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 52615048 - 52614949
Alignment:
Q  21 cacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagcacag 120  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  52615048 cacctaatacgattcaaactaactcacaaatcagatgaaca-aatacctgaattgagcagagtttgaatccaaaaaacaatc-ttgtttcgcaagcacag 52614951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 667
Target Start/End: Complemental strand, 5292570 - 5292532
Alignment:
Q  629 tattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  5292570 tattatggagagcttatggaaataagctgaaaacaactt 5292532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 26542547 - 26542592
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||    
T  26542547 tttcataagctattatggagagtttatggaaataagttgaaaacaa 26542592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 14548781 - 14548737
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||| |||| || |||||||||||||||||||||||||||    
T  14548781 tttcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 27792882 - 27792930
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| |||| ||| ||||||||| |||||||||||||||||||||    
T  27792882 tttcataaactatcatgtagagcttatagaaataagctgaaaacaactt 27792930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 54180840 - 54180792
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  54180840 tttcataagctattatggagagcttatataaataagctaaaaacaactt 54180792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 662
Target Start/End: Original strand, 2071066 - 2071109
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaac 662  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||    
T  2071066 tttcataagctatgatgaagagcttatgaaaataagctaaaaac 2071109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 21862217 - 21862187
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  21862217 agagcttatggaaataagctgaaaacaactt 21862187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 45432981 - 45432951
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  45432981 agagcttatggaaataagctgaaaacaactt 45432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 667
Target Start/End: Complemental strand, 54137684 - 54137638
Alignment:
Q  621 tcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||    
T  54137684 tcataagctattctggtgagcttatggaaataagctgataacaactt 54137638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 20502128 - 20502083
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||||||||||  |||||||||||||  ||||||||||||||||    
T  20502128 tttcataagctatcctgaagagcttatgagaataagctgaaaacaa 20502083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 659
Target Start/End: Original strand, 23315639 - 23315676
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaa 659  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  23315639 cataagctattctaaagagcttatggaaataagctgaa 23315676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 41633370 - 41633415
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||| ||||||| || |||||||||| |||||||||||||||||    
T  41633370 tttcatcagctattttggagagcttatgaaaataagctgaaaacaa 41633415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 667
Target Start/End: Complemental strand, 49546541 - 49546496
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||| ||| ||||||||| |||||| ||||||||||||||    
T  49546541 cataagctatcatggagagcttattgaaatatgctgaaaacaactt 49546496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 9279386 - 9279342
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||    
T  9279386 tttcataaactatcatgaagagtttaaggaaataagctgaaaaca 9279342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 12985405 - 12985357
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  | |||| ||||||||||||||| |||||||||||    
T  12985405 tttcataagctatcctcaagaacttatggaaataagccgaaaacaactt 12985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 23785265 - 23785313
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||| ||||| | ||| |||||||||||||| ||||||||||||||||    
T  23785265 tttcacaagctctcatggagagcttatggaaacaagctgaaaacaactt 23785313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 23793594 - 23793642
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || | ||||||| |||||||||||||||||||||    
T  23793594 tttcataagctatcttggaaagcttatagaaataagctgaaaacaactt 23793642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 24887343 - 24887299
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||||||| |||||||||||||||    
T  24887343 tttcataagctatcctggagagcttatgggaataagctgaaaaca 24887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 34414844 - 34414796
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| |||| ||| |||| ||||| ||||||||||||||||||||    
T  34414844 tttcataaactatcatggagagtttatgaaaataagctgaaaacaactt 34414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 36200110 - 36200154
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||  || |||||| ||||||||||||||||||||||||    
T  36200110 ataagctatcctgtagagctcatggaaataagctgaaaacaactt 36200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 37273144 - 37273192
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || ||| |||||||||||||| ||||||||||||    
T  37273144 tttcataagctatcttggagaacttatggaaataagttgaaaacaactt 37273192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 667
Target Start/End: Original strand, 38462311 - 38462339
Alignment:
Q  639 agcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||    
T  38462311 agcttatggaaataagctgaaaacaactt 38462339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 52614181 - 52614225
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| |||| ||| ||| |||||||||||||||||||||||    
T  52614181 ataagctactatgtagaacttgtggaaataagctgaaaacaactt 52614225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 554
Target Start/End: Complemental strand, 34358 - 33813
Alignment:
Q  17 atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc 116  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34358 atcgcacctaatatgatccaaactaactcacaaataagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagc 34260  T
Q  117 acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34259 aaagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 34160  T
Q  217 gtggctatttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtat--atatgtccttcctatattatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34159 gtggctatttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtatatatatgtccttcctatattatgt 34060  T
Q  315 cattattcataatcataccaacgtgactatttcatgcacctgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 414  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34059 cattattcataatcataccaacgtgactatttcatgcacatgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 33960  T
Q  415 ta-------taagtattaactagctaaaataatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctca 507  Q
    ||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959 tataagtattaagtattaactagctaaaatgatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctca 33860  T
Q  508 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaa 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33859 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaa 33813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 560 - 667
Target Start/End: Complemental strand, 33758 - 33639
Alignment:
Q  560 ttatgtcagatattagcttataaaaacagggccttgtttggataaac------------cacttaagcaactttcataagctattatgaagagcttatgg 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  33758 ttatgtcagatattagcttataaaaacagggccttgtttggataaactactttattaaccacttaagcaactttcataagctattatgaagagcttatgg 33659  T
Q  648 aaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||    
T  33658 aaataagctgaaaacaactt 33639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 554
Target Start/End: Complemental strand, 20513375 - 20512830
Alignment:
Q  17 atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20513375 atcgcacctaatacgatccaaactaactcacaaatcagatgaacataatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagc 20513277  T
Q  117 acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20513276 acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc 20513177  T
Q  217 gtggctatttcataatcataccaacgtaaggatccattgattatatttggcaatgcaaggtccctctacgaggtat--atatgtccttcctatattatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20513176 gtggctatttcataatcataccaacgtaaggatccattgattatattcggcaatgcaaggtccctctacgaggtatatatatgtccttcctatattatgt 20513077  T
Q  315 cattattcataatcataccaacgtgactatttcatgcacctgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 414  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20513076 cattattcataatcataccaacgtgactatttcatgcacatgaggaaaaaataaataccttttctaaattggtctattccatgataagaatacaacatag 20512977  T
Q  415 ta-------taagtattaactagctaaaataatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttacagctca 507  Q
    ||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  20512976 tataagtattaagtattaactagctaaaatgatactacttatgctatgtacagaattgtcaattagtttctaaaaagataaacggtgcagttactcctca 20512877  T
Q  508 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaa 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20512876 tggtagagtttcaatggtgaacaacacaatatgaggcaatggtagaa 20512830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 560 - 667
Target Start/End: Complemental strand, 20512775 - 20512656
Alignment:
Q  560 ttatgtcagatattagcttataaaaacagggccttgtttggataaac------------cacttaagcaactttcataagctattatgaagagcttatgg 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  20512775 ttatgtcagatattagcttataaaaacagggccttgtttggataaactactttattaaccacttaagcaactttcataagctattatgaagagcttatgg 20512676  T
Q  648 aaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||    
T  20512675 aaataagctgaaaacaactt 20512656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 6637570 - 6637641
Alignment:
Q  132 gaccagacttaatctcacaa--caagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaa 201  Q
    |||| |||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| ||||| ||||    
T  6637570 gaccggacttaatctcacaaaacaagactgaaaccactttgtttttaatctctttgcctagcgaaaaacaaa 6637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 2460206 - 2460163
Alignment:
Q  624 taagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||| |||||||||||||||||| ||||||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaactt 2460163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 667
Target Start/End: Original strand, 6536972 - 6537005
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||||||||||||||||    
T  6536972 tgaagagcttatggaaataagctgaaaacaactt 6537005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 667
Target Start/End: Original strand, 34939526 - 34939571
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  34939526 cataagctatcctgaagaggttatggaaataagctgaaaacaactt 34939571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 7785796 - 7785756
Alignment:
Q  627 gctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  7785796 gctattttggagagcttatggaaataagctgaaaacaactt 7785756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 667
Target Start/End: Original strand, 10154223 - 10154279
Alignment:
Q  611 taagcaactttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||| ||||||||| ||||  ||||| ||||||||||||||| |||||||||||||    
T  10154223 taagctactttcataggctagcatgaaaagcttatggaaataaactgaaaacaactt 10154279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 7931831 - 7931801
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  7931831 agagcttatggaaataagctgaaaacaactt 7931801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 9833166 - 9833128
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  9833166 ataagctatcatgaagagcttatggaaataagttgaaaa 9833128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 663
Target Start/End: Original strand, 13908479 - 13908517
Alignment:
Q  625 aagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  13908479 aagctatcatgaagagcttatgaaaataagctgaaaaca 13908517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 653
Target Start/End: Complemental strand, 19275696 - 19275662
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataa 653  Q
    ||||||||||||| |||||||||||||||||||||    
T  19275696 tttcataagctatcatgaagagcttatggaaataa 19275662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 27909680 - 27909650
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  27909680 agagcttatggaaataagctgaaaacaactt 27909650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 665
Target Start/End: Complemental strand, 28088282 - 28088236
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaac 665  Q
    ||||||||||||| ||| |||||| ||||||||||||| ||||||||    
T  28088282 tttcataagctatcatggagagctcatggaaataagctcaaaacaac 28088236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 32387115 - 32387073
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||    
T  32387115 tttcataagttattctgaagagcttatgaaaataagctgaaaa 32387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 1401119 - 1401164
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    ||||||||||||| ||| |||||||||||| ||||||||| |||||    
T  1401119 tttcataagctatcatggagagcttatggagataagctgagaacaa 1401164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 24836262 - 24836217
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  24836262 tttcgtaagctatcatggagagcttatggaaataagctggaaacaa 24836217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 668
Target Start/End: Original strand, 33887840 - 33887889
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttg 668  Q
    |||||||||||||  ||||  ||||||||||||||| |||||||||||||    
T  33887840 tttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttg 33887889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 659
Target Start/End: Complemental strand, 2205650 - 2205610
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaa 659  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  2205650 tttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 4420653 - 4420697
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||| ||||||||  || |||||||||||||||||||||||||||    
T  4420653 tttcctaagctatcttggagagcttatggaaataagctgaaaaca 4420697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 635 - 667
Target Start/End: Original strand, 9027604 - 9027636
Alignment:
Q  635 gaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||| ||||||||||||||||||||    
T  9027604 gaagagcttatgaaaataagctgaaaacaactt 9027636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 27998472 - 27998428
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||| |||| |||||||| |||| |||||||||||||||||||||    
T  27998472 ataacctataatgaagagtttatagaaataagctgaaaacaactt 27998428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 30533799 - 30533843
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||||||||||||||||  |||||| | |||||||    
T  30533799 tttcataagctattatgaagagcttattcaaataatccgaaaaca 30533843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 31583689 - 31583737
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||   ||| |||||||||||||||| ||||||||||||    
T  31583689 tttcataagctatcccgaaaagcttatggaaataagttgaaaacaactt 31583737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 32578042 - 32578002
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||  |||||||| |||||||||||||||||||||    
T  32578042 ataagctatcctgaagagcatatggaaataagctgaaaaca 32578002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 34404107 - 34404147
Alignment:
Q  627 gctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| ||||||||| |||||||| ||||||||||||    
T  34404107 gctattatggagagcttatagaaataagttgaaaacaactt 34404147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 664
Target Start/End: Original strand, 34939755 - 34939799
Alignment:
Q  620 ttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    ||||||||||||  || |||| |||||||||||||||||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaa 34939799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 36815358 - 36815457
Alignment:
Q  244 aaggatccattgatt--atatttggcaatgcaaggtccctctacgaggtatatatgtccttcctatattatgtcattattcataatcataccaacgtgac 341  Q
    |||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36815358 aaggatccattgattttatatttggcaatgcaaggtcactctatgaggtatatatgtccttcctatatcatgtcattattcataatcataccaacgtgac 36815457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 36815473 - 36815522
Alignment:
Q  365 ataaataccttttctaaattggtctattccatgataagaatacaacatag 414  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  36815473 ataaataccttttctatattggtttattctatgataagaatacaacatag 36815522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 524
Target Start/End: Original strand, 36815597 - 36815642
Alignment:
Q  479 aaaaagataaacggtgcagttacagctcatggtagagtttcaatgg 524  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  36815597 aaaaacataaacggtgcagttacagctcatggaagagtttcaatgg 36815642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 4966166 - 4966214
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  4966166 tttcataagccatcctgaagagcttatggaaataaactgaaaacaactt 4966214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 6263423 - 6263376
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  6263423 tttcataagctattatggagagcatatggaaataagct-aaaacaactt 6263376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 7244690 - 7244738
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| ||||||||||||||||||||    
T  7244690 tttcataagctatattggagagcttatgaaaataagctgaaaacaactt 7244738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 12792623 - 12792579
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||    
T  12792623 tttcataagctatcttgaagagcttatgaaaataagctgaaaaca 12792579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 12792749 - 12792709
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  12792749 ataagctattctgaagagcttacggaaataagctgaaaaca 12792709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 24363661 - 24363613
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||| ||||||||||||||||||||||||||    
T  24363661 tttcataagctatcctggagaggttatggaaataagctgaaaacaactt 24363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 26935617 - 26935573
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||    
T  26935617 tttcataatctattctaaagagcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 666
Target Start/End: Complemental strand, 45859586 - 45859539
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    |||||||  |||| ||||||||||||| ||||||||||||||||||||    
T  45859586 tttcatagactatcatgaagagcttatagaaataagctgaaaacaact 45859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 12792684 - 12792642
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    |||||||||||||  |||||||| |||||||||||||||||||    
T  12792684 tttcataagctatcttgaagagcatatggaaataagctgaaaa 12792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 39505966 - 39506008
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    |||||||||||||| || |||| ||||||||||||||||||||    
T  39505966 tttcataagctattctggagagtttatggaaataagctgaaaa 39506008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 663
Target Start/End: Original strand, 40428568 - 40428609
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||  | ||||||||||||||||||||||||||||    
T  40428568 cataagctatcctaaagagcttatggaaataagctgaaaaca 40428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 12792558 - 12792514
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  |||||||||||| |||||||||||| ||||    
T  12792558 tttcataagctatcttgaagagcttattgaaataagctgataaca 12792514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 25596043 - 25596091
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| ||||||| ||||||||||||    
T  25596043 tttcataagctatcttggagagcttatgaaaataagttgaaaacaactt 25596091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 27626183 - 27626139
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||| |||||||| |||||||||||||||||||||| | ||||||    
T  27626183 tttcctaagctatcatgaagagcttatggaaataagtttaaaaca 27626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 28165105 - 28165145
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||| ||| |||||||||||||||||| ||||||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaaca 28165145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 666
Target Start/End: Original strand, 29286804 - 29286848
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    |||||| |||| |||| |||||||| |||||||||||||||||||    
T  29286804 cataagttattttgaaaagcttatgtaaataagctgaaaacaact 29286848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 44151540 - 44151496
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||| ||||  |||| |||||||||||||||||||||||||    
T  44151540 tttcataaactatcttgaaaagcttatggaaataagctgaaaaca 44151496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 44821969 - 44822017
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| || ||| |||||| ||||||| ||||||||||||    
T  44821969 tttcataagctattctggagaacttatgaaaataagttgaaaacaactt 44822017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 46082054 - 46082094
Alignment:
Q  627 gctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  46082054 gctattctggagagcttatgaaaataagctgaaaacaactt 46082094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 46104627 - 46104583
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  ||||||||||||| |||||||||| |||||    
T  46104627 tttcataagctatgctgaagagcttatgaaaataagctggaaaca 46104583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 11795102 - 11795146
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  11795102 tttcataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 28769399 - 28769351
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| || |||| ||||||||||||||||||||||||||    
T  28769399 tttcataagctattttggagagtttatggaaataagctgaaaacaactt 28769351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 612 - 667
Target Start/End: Complemental strand, 25869333 - 25869278
Alignment:
Q  612 aagcaactttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||| ||||||| ||||| ||| |||| ||||||||||||||||||||||||||    
T  25869333 aagcaattttcataggctatcatggagagtttatggaaataagctgaaaacaactt 25869278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 663
Target Start/End: Complemental strand, 42370419 - 42370377
Alignment:
Q  621 tcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  42370419 tcataagctatcatgaagagtttatggaaataagctgaaaaca 42370377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 4762519 - 4762564
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||    
T  4762519 tttcataagctatcttgaagagcttatgtaaataagctgaaaacaa 4762564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 39561601 - 39561557
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||    
T  39561601 tttcgtaagctatcatgaaaagcttatggaaataagctgaaaaca 39561557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 42215142 - 42215094
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| ||||||||||||||||||||    
T  42215142 tttcataagctatcttggagagcttatgtaaataagctgaaaacaactt 42215094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 667
Target Start/End: Original strand, 6950349 - 6950380
Alignment:
Q  636 aagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||||||||||||||    
T  6950349 aagagcttatggaaataagctgaaaacaactt 6950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 39881808 - 39881769
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaac 662  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  39881808 ataagctatcatggagagcttatggaaataagctgaaaac 39881769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 4390108 - 4390070
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  4390108 ataagctattttgatgagcttatggaaataagctgaaaa 4390070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 668
Target Start/End: Complemental strand, 13000485 - 13000435
Alignment:
Q  618 ctttcataagctattatgaagagcttatggaaataagctgaaaacaacttg 668  Q
    ||||||||| || | ||| | ||||||||||||||||||||||||||||||    
T  13000485 ctttcataaactgtcatgcaaagcttatggaaataagctgaaaacaacttg 13000435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Original strand, 30918141 - 30918171
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  30918141 agagcttatggaaataagctgaaaacaactt 30918171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 657
Target Start/End: Original strand, 33553250 - 33553288
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctg 657  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  33553250 tttcataagctatcttgaagagcttatggaaataagctg 33553288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 41606945 - 41606915
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  41606945 agagcttatggaaataagctgaaaacaactt 41606915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 633 - 666
Target Start/End: Original strand, 7039834 - 7039867
Alignment:
Q  633 atgaagagcttatggaaataagctgaaaacaact 666  Q
    |||||||||||||||||||||| |||||||||||    
T  7039834 atgaagagcttatggaaataagttgaaaacaact 7039867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 667
Target Start/End: Complemental strand, 11000621 - 11000588
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||| |||||||    
T  11000621 tgaagagcttatggaaataagctgaagacaactt 11000588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 660
Target Start/End: Original strand, 11494156 - 11494197
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaa 660  Q
    |||||||||||||  ||||||||||||| |||||||||||||    
T  11494156 tttcataagctatcttgaagagcttatgaaaataagctgaaa 11494197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 7918833 - 7918789
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||| |||||||||||||||||||    
T  7918833 tttcataagctatcttgtagagcttgtggaaataagctgaaaaca 7918789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 11569517 - 11569469
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||| ||| |||| || || ||||||||||||||||||||    
T  11569517 tttcataagctatcatggagagattttgaaaataagctgaaaacaactt 11569469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 14929198 - 14929154
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || ||||||| |||||||||||||||||||    
T  14929198 tttcataagctatgttgcagagcttttggaaataagctgaaaaca 14929154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 26479795 - 26479843
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| ||||| || |||||||||||||||| |||||||| |||||    
T  26479795 tttcataacctattctggagagcttatggaaatacgctgaaaaaaactt 26479843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 659
Target Start/End: Original strand, 27754414 - 27754454
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaa 659  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  27754414 tttcataagctattttggagagcttatgaaaataagctgaa 27754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 30277305 - 30277257
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |  |||| ||||||||||||||||||||||||||    
T  30277305 tttcataagctatcctagagagtttatggaaataagctgaaaacaactt 30277257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 44236883 - 44236835
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| |||||||||||||| |||||    
T  44236883 tttcataagctatattggagagcttatgaaaataagctgaaaataactt 44236835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 5047156 - 5047200
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  5047156 tttcataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 11893653 - 11893605
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11893653 tttcataagctattttgaagagtttatggaaataagctgaaaacaactt 11893605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 619 - 666
Target Start/End: Complemental strand, 35590952 - 35590905
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  35590952 tttcataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 16322859 - 16322907
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  16322859 tttcataggctattttgaagagcttatggaaataagctaaaaacaactt 16322907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 37593744 - 37593700
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||    
T  37593744 tttcataagctattttgaagagcttatgaaaataagctgaaaaca 37593700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 667
Target Start/End: Complemental strand, 48748360 - 48748327
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||||||||||||||||||||    
T  48748360 tgaagagcttatggaaataagctgaaaacaactt 48748327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 10199468 - 10199420
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| |  |||||||||| ||||||||||||||||||||    
T  10199468 tttcataagctattttagagagcttatgaaaataagctgaaaacaactt 10199420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 12564559 - 12564511
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || ||| |||||||||||||||||||||||||||    
T  12564559 tttcataagctatcttggagaacttatggaaataagctgaaaacaactt 12564511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 27140492 - 27140536
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||    
T  27140492 ataagctatcatggagagcttatgcaaataagctgaaaacaactt 27140536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 27963430 - 27963382
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  27963430 tttcataagctattatggagagcttatataaataagctaaaaacaactt 27963382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 28077129 - 28077081
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| |  ||||||||| |||||||||||||||||||||    
T  28077129 tttcataagctattttagagagcttattgaaataagctgaaaacaactt 28077081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 34290246 - 34290294
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||||| |||||| ||||||||||||||||||||    
T  34290246 tttcataagctatcttgaagaacttatgaaaataagctgaaaacaactt 34290294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 45205078 - 45205126
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  45205078 tttcataagctatcatgtagagttcatggaaataagctgaaaacaactt 45205126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 47877123 - 47877167
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||    
T  47877123 ataagctattatggaaagcttatgaaaataagctgaaaacaactt 47877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 5150947 - 5150989
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    ||||||||||||| ||||||||||||| |||||||| ||||||    
T  5150947 tttcataagctatcatgaagagcttatagaaataagttgaaaa 5150989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 665
Target Start/End: Original strand, 23402045 - 23402087
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaac 665  Q
    ||||||||| ||  |||||||||||||||||||||||||||||    
T  23402045 ataagctatcatcgagagcttatggaaataagctgaaaacaac 23402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 665
Target Start/End: Complemental strand, 26462000 - 26461955
Alignment:
Q  620 ttcataagctattatgaagagcttatggaaataagctgaaaacaac 665  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||    
T  26462000 ttcataagctatcctgcagagcttatgaaaataagctgaaaacaac 26461955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 667
Target Start/End: Complemental strand, 43954090 - 43954057
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||| ||||||||||||||||||    
T  43954090 tgaagagcttatggagataagctgaaaacaactt 43954057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 666
Target Start/End: Original strand, 49175635 - 49175676
Alignment:
Q  625 aagctattatgaagagcttatggaaataagctgaaaacaact 666  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||    
T  49175635 aagctatcatgtagaacttatggaaataagctgaaaacaact 49175676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 3924638 - 3924682
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||  ||||||| |||||||||||||| |||||||||||    
T  3924638 ataagctatcctgaagagtttatggaaataagccgaaaacaactt 3924682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 667
Target Start/End: Original strand, 4549260 - 4549288
Alignment:
Q  639 agcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||    
T  4549260 agcttatggaaataagctgaaaacaactt 4549288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 5592745 - 5592697
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||| | | ||||||||||| |||||||||| |||||||||    
T  5592745 tttcataagctagtcttaagagcttatgaaaataagctggaaacaactt 5592697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 6279409 - 6279457
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |  |||||||||||||||| ||||||||||||||    
T  6279409 tttcataagctatcctagagagcttatggaaatacgctgaaaacaactt 6279457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 6981502 - 6981550
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||| ||||||||| || |||| ||||||||||| ||||||||||||||    
T  6981502 tttcctaagctattctggagagtttatggaaatatgctgaaaacaactt 6981550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 7262578 - 7262534
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  |||||||||| |||||||||| ||||||||    
T  7262578 tttcataagctatcctgaagagcttgtggaaataaggtgaaaaca 7262534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 11211128 - 11211176
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||| ||||| |||| ||||||||||||| | ||||||||||    
T  11211128 tttcataagctgttatggagagtttatggaaataagttaaaaacaactt 11211176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 12477343 - 12477299
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| ||| ||||  |||||||||||||||||||||||||    
T  12477343 ataagctatcatggagagtgtatggaaataagctgaaaacaactt 12477299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 14630026 - 14629978
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||  ||||||||||||||||||||||||||    
T  14630026 tttcataagctatcttggagactttatggaaataagctgaaaacaactt 14629978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 23373372 - 23373328
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  |||||||||||  |||||||||||||||||    
T  23373372 tttcataagctatcctgaagagcttacagaaataagctgaaaaca 23373328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 26779985 - 26779937
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||||| |||||| ||||||| ||||||||||||    
T  26779985 tttcataagctatcttgaagaacttatgaaaataagttgaaaacaactt 26779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 26916215 - 26916259
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||| |||| || ||||||||||||||||||||| |||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctggaaacaactt 26916259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 35179149 - 35179193
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||    
T  35179149 tttcataagttattatggagaacttatgaaaataagctgaaaaca 35179193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 667
Target Start/End: Complemental strand, 39348007 - 39347979
Alignment:
Q  639 agcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||    
T  39348007 agcttatggaaataagctgaaaacaactt 39347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 43332494 - 43332538
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||    
T  43332494 tttcataagctatcttgaagagcttattaaaataagctgaaaaca 43332538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 44815354 - 44815318
Alignment:
Q  628 ctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    ||||| || ||||||||||||||||||||||||||||    
T  44815354 ctattttggagagcttatggaaataagctgaaaacaa 44815318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 47598481 - 47598433
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || ||||||||||| || ||||||||||||||||    
T  47598481 tttcataagctatcctggagagcttatggcaacaagctgaaaacaactt 47598433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 2592365 - 2592321
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaactt 2592321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 27123407 - 27123364
Alignment:
Q  624 taagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||| |||||||||||||||||| ||||||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaactt 27123364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 11802544 - 11802588
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||    
T  11802544 tttcataagctattatggagagcttatgagaataagctgaaaaca 11802588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 18628603 - 18628555
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||||    
T  18628603 tttcataagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 23819099 - 23819147
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||    
T  23819099 tttcataagctatcttgaagagcttatagaaataagatgaaaacaactt 23819147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 29263380 - 29263428
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || ||||||| |||||||||||||||||||||||    
T  29263380 tttcataagctatcctgcagagcttgtggaaataagctgaaaacaactt 29263428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 37575996 - 37575948
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||| |||| |||||||||||| |||||||||| |||||||||||||||    
T  37575996 tttcgtaagatattatgaagagtttatggaaatgagctgaaaacaactt 37575948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 45927359 - 45927403
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||    
T  45927359 tttcagaagctattatggagagtttatggaaataagctgaaaaca 45927403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 46110213 - 46110261
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||| ||  ||||||||| |||||||||||||||||||||    
T  46110213 tttcataagctatgattgagagcttatagaaataagctgaaaacaactt 46110261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 53673718 - 53673670
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| ||||||||||||||||||||    
T  53673718 tttcataagctatcttggagagcttatgtaaataagctgaaaacaactt 53673670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 662
Target Start/End: Original strand, 47800633 - 47800676
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaac 662  Q
    |||||||||||||  ||||||||||||| |||||||||||||||    
T  47800633 tttcataagctatcttgaagagcttatgaaaataagctgaaaac 47800676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 5131292 - 5131262
Alignment:
Q  637 agagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||||    
T  5131292 agagcttatggaaataagctgaaaacaactt 5131262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 667
Target Start/End: Original strand, 35743290 - 35743340
Alignment:
Q  617 actttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||| |||| |||||||| ||||||||||||| || |||||||||    
T  35743290 actttcataaactatcatgaagagtttatggaaataagttggaaacaactt 35743340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 663
Target Start/End: Original strand, 14011247 - 14011288
Alignment:
Q  622 cataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  14011247 cataagctatcttggagagcttatggaaataagctgaaaaca 14011288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 35064865 - 35064910
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    ||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  35064865 tttcataagatatcatggagagtttatggaaataagctgaaaacaa 35064910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 43412371 - 43412416
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||||||||| ||||||||||||||| ||||||| || ||||||    
T  43412371 tttcataagctactatgaagagcttatgcaaataagatggaaacaa 43412416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 825550 - 825506
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||| || ||| |||||| ||||||||||||||||    
T  825550 tttcataagctattttggagaacttatgaaaataagctgaaaaca 825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 663
Target Start/End: Original strand, 6364151 - 6364203
Alignment:
Q  611 taagcaactttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||| ||||||||||||| ||| ||| |||| | ||||||||||||||||    
T  6364151 taagcaattttcataagctataatggagaacttacgaaaataagctgaaaaca 6364203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 6428032 - 6428076
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  6428032 ataagctactatgaagagcttatggaaatatgcttaaatcaactt 6428076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 7694070 - 7694022
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| |||  || |||| ||||||||||||||||||||||||||    
T  7694070 tttcataagttatcctggagagtttatggaaataagctgaaaacaactt 7694022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 17884078 - 17884126
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| |||| |||||||||||||||    
T  17884078 tttcataagctatattggagagcttatgaaaattagctgaaaacaactt 17884126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 19429723 - 19429763
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||  || |||||||||||||||||||||||||||    
T  19429723 ataagctatcctggagagcttatggaaataagctgaaaaca 19429763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 21157778 - 21157822
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||| |||||  ||||||||||||||||||||||| ||||||    
T  21157778 tttcatatgctatcctgaagagcttatggaaataagctaaaaaca 21157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 28300359 - 28300311
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||| |||||  ||||||||||||| ||||||| ||||||||||||    
T  28300359 tttcataggctatcttgaagagcttatgaaaataagttgaaaacaactt 28300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 655
Target Start/End: Original strand, 28615344 - 28615380
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagc 655  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  28615344 tttcataagctataatgaagagcttatgaaaataagc 28615380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 32066146 - 32066102
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  32066146 tttcataagctatcatgtaaagcttatggaaataagcttaaaaca 32066102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 34398745 - 34398697
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||| || ||| ||||||||||||| ||||| |||||||||||    
T  34398745 tttcataagccatcatggagagcttatggaagtaagccgaaaacaactt 34398697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 667
Target Start/End: Original strand, 43824313 - 43824341
Alignment:
Q  639 agcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||||||||||||||||||    
T  43824313 agcttatggaaataagctgaaaacaactt 43824341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 49219149 - 49219197
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||| ||||  | ||||| ||||||||||||||||||||||||||    
T  49219149 tttcataaactatcttaaagagattatggaaataagctgaaaacaactt 49219197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 55547104 - 55547056
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  |||| || ||||||||||||||| ||||||||||    
T  55547104 tttcataagctatgctgaaaagtttatggaaataagctaaaaacaactt 55547056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 7871653 - 7871697
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  7871653 tttcataagctcttttgaagagcttatggaaataagctgaaaaca 7871697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 42817436 - 42817388
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  42817436 tttcataagctattctgaagagcttatggaagtaagctaaaaacaactt 42817388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 1647250 - 1647290
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaaca 1647290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 6227761 - 6227809
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||| || ||||||||||| || ||||||||||||||||    
T  6227761 tttcataagctattttggagagcttatggtaacaagctgaaaacaactt 6227809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 35379076 - 35379028
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  || |||||||||| ||||||||||||||||||||    
T  35379076 tttcataagctatcttggagagcttatgaaaataagctgaaaacaactt 35379028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 40837491 - 40837453
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  40837491 ataagctatcatgtagagcttatggaaataagctgaaaa 40837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 43985063 - 43985021
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaa 661  Q
    |||||||||||||  ||||||||||||| ||||||||||||||    
T  43985063 tttcataagctatcttgaagagcttatgaaaataagctgaaaa 43985021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 668
Target Start/End: Complemental strand, 8187513 - 8187464
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttg 668  Q
    ||||||||||||  ||| |||| |||||||||||| ||||||||||||||    
T  8187513 tttcataagctaccatggagagattatggaaataacctgaaaacaacttg 8187464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 663
Target Start/End: Original strand, 11063218 - 11063247
Alignment:
Q  634 tgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||||||||||||||||||||    
T  11063218 tgaagagcttatggaaataagctgaaaaca 11063247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 667
Target Start/End: Original strand, 11488286 - 11488335
Alignment:
Q  618 ctttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||||||||  || |||| ||||| ||||||||||||||||||||    
T  11488286 ctttcataagctatcctggagagattatgcaaataagctgaaaacaactt 11488335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 15977995 - 15978040
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||||||||||| || |||| ||||| |||||||||||||||||    
T  15977995 tttcataagctattttggagagattatgaaaataagctgaaaacaa 15978040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 41817178 - 41817223
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaa 664  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||    
T  41817178 tttcataaactatcctggagagcttatggaaataagctgaaaacaa 41817223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 1939392 - 1939348
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || |||||||||||||||||| ||||||||    
T  1939392 tttcataagctatactggagagcttatggaaataagttgaaaaca 1939348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 15866736 - 15866684
Alignment:
Q  611 taagcaactttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||| |||||||||||||||  || |||||||||| ||| ||||||||||||    
T  15866736 taagccactttcataagctatcctggagagcttatgtaaacaagctgaaaaca 15866684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 16867749 - 16867797
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||| |||||||  || |||||||||||||||||| ||||||||||||    
T  16867749 tttcacaagctatcttggagagcttatggaaataagttgaaaacaactt 16867797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 24098112 - 24098156
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||  ||||| || |||||||||||||||||||||||||||    
T  24098112 tttcatagcctattttggagagcttatggaaataagctgaaaaca 24098156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 27288641 - 27288689
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| ||| ||| |||| ||| ||||||||||||||||||||||    
T  27288641 tttcataagttatcatgtagagtttacggaaataagctgaaaacaactt 27288689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 34652096 - 34652052
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    |||||||||||||  || |||||||||||||||||| ||||||||    
T  34652096 tttcataagctatcttggagagcttatggaaataagttgaaaaca 34652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 35462769 - 35462817
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||   ||||||| ||||||||| |||||||||||||||    
T  35462769 tttcataagctatccggaagagcctatggaaattagctgaaaacaactt 35462817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 40158728 - 40158776
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    ||||||||| |||| || |||||||||| || |||||||||||||||||    
T  40158728 tttcataagttattctggagagcttatgtaattaagctgaaaacaactt 40158776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 43141881 - 43141929
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaacaactt 667  Q
    |||||||||||||  ||||||| ||||||||||||  ||||||||||||    
T  43141881 tttcataagctatcctgaagagtttatggaaataaaatgaaaacaactt 43141929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 43205319 - 43205363
Alignment:
Q  619 tttcataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||||||||||| | | |||||||||||||||||| ||||||||    
T  43205319 tttcataagctatcacggagagcttatggaaataagttgaaaaca 43205363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 6693 - 6653
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  6693 ataagttattatgcagagcttatggaaataagttgaaaaca 6653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 116612 - 116572
Alignment:
Q  623 ataagctattatgaagagcttatggaaataagctgaaaaca 663  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  116612 ataagttattatgcagagcttatggaaataagttgaaaaca 116572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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