View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19710_low_2 (Length: 646)
Name: NF19710_low_2
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 290 - 646
Target Start/End: Original strand, 35228045 - 35228401
Alignment:
| Q |
290 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
389 |
Q |
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| T |
35228045 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
35228144 |
T |
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| Q |
390 |
agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtgccataaccaactatagtcactgtatgatctaaataaattccacatttt |
489 |
Q |
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| T |
35228145 |
agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtaccataaccaactatagtaactgtatgatctaaatcaattccacatttt |
35228244 |
T |
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| Q |
490 |
ccttccaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcaatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
589 |
Q |
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| T |
35228245 |
cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcgatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
35228344 |
T |
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| Q |
590 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctt |
646 |
Q |
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| T |
35228345 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctt |
35228401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 35227849 - 35227961
Alignment:
| Q |
20 |
agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagggaaacaaactcactcaattcatataattcatgagaaaaat |
119 |
Q |
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| T |
35227849 |
agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagtgaaacaaactcactcatttcatatcattcatgagaaaaat |
35227948 |
T |
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| Q |
120 |
ctcaagtattaca |
132 |
Q |
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| T |
35227949 |
ctcaagtattaca |
35227961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 35227963 - 35228046
Alignment:
| Q |
167 |
tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
250 |
Q |
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| T |
35227963 |
tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
35228046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 31176467 - 31176515
Alignment:
| Q |
373 |
cctttctcaccccatttagtaccccatgaatttttcactagccaatact |
421 |
Q |
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| T |
31176467 |
cctttctcaccccacccagtaccccatgaattttttactaaccaatact |
31176515 |
T |
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