View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19710_low_4 (Length: 519)
Name: NF19710_low_4
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 77 - 503
Target Start/End: Complemental strand, 32121420 - 32120990
Alignment:
| Q |
77 |
tgaaagtttagttgggagcgagcaattcctgatgggggaagagcattttccaataaagagtttacttgaaaactttcaataaggtgcataagctttagaa |
176 |
Q |
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| T |
32121420 |
tgaaagtttggttgggagcgagcaattcgtgacgggggaagagcattttccagtaaagagtttacttgaaaactttcaataaggtgcataagctttagaa |
32121321 |
T |
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| Q |
177 |
cttttagtgaggtgcataaactccttcaattcaagtctctttcaaaagttaatgttacattacttttgtaccaataggatattatgctaaatttatatat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
32121320 |
cttttagtgaggtgcataaactccttcaattcaagtctctttcaaaagttaatgttacattacttttgtatcaatag-atattatgctaaatttatatat |
32121222 |
T |
|
| Q |
277 |
tttttccaattaattattgtatcatataaaaagaaaaggtaaacgaaattgatgctggaaatttggaatcaggaaaatgaattattacatgtatatcatt |
376 |
Q |
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| T |
32121221 |
tttttccaattaattattgtatcatataaaaagaaaaggtaaacgaaattgatactggaaatttggaatcaggaaaatgaattattacatgtatatcatt |
32121122 |
T |
|
| Q |
377 |
tttaagaaataaaagaaattgaaaaattaattacatatatataccaataaatgaattgagttcccatggtaaagggaaaatgacatgacatgaaataa-- |
474 |
Q |
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| T |
32121121 |
tttaagaaataaaagaaattgaaaaattaattacatatatataccaataaatgaattgagttcccatggtaaagggaaaatgacatgacatgaaataatt |
32121022 |
T |
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| Q |
475 |
---ttttggcttacaaaagatatactactagt |
503 |
Q |
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| T |
32121021 |
ttcttttggcttacaaaagatatactactagt |
32120990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 32122586 - 32122523
Alignment:
| Q |
17 |
acattctaaagtactagtaaaattgtgttgtagtgtttcctttgaagttttcatacaaggtgaa |
80 |
Q |
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| T |
32122586 |
acattctaaagtactagtaaaattgtgttgtagtgtttcctttgaagttttcatacaaggtgaa |
32122523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 53214335 - 53214288
Alignment:
| Q |
78 |
gaaagtttagttgggagcgagcaattcctgatgggggaagagcatttt |
125 |
Q |
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|||||||||||||||||||||||||| ||||||| | |||||||||| |
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| T |
53214335 |
gaaagtttagttgggagcgagcaatttttgatgggaggagagcatttt |
53214288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 28009235 - 28009282
Alignment:
| Q |
77 |
tgaaagtttagttgggagcgagcaattcctgatgggggaagagcattt |
124 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||||||||||| |
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| T |
28009235 |
tgaaagtttggttgggagcgagcaatttttgatgggagaagagcattt |
28009282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 28066538 - 28066585
Alignment:
| Q |
77 |
tgaaagtttagttgggagcgagcaattcctgatgggggaagagcattt |
124 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||||||||||| |
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| T |
28066538 |
tgaaagtttggttgggagcgagcaatttttgatgggagaagagcattt |
28066585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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