View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19710_low_5 (Length: 467)
Name: NF19710_low_5
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 204 - 466
Target Start/End: Complemental strand, 23165100 - 23164838
Alignment:
| Q |
204 |
tacatgaaccacacttgtatattattgtaaaataatctaacatatgttgtatgaatgagattatccatgattttcagttgtatccgaaaatacctcatga |
303 |
Q |
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| T |
23165100 |
tacatgaaccatgcttatatattattgtaaaataatctaacatatgttgtatgaatgagattatccatgattttcagttgtatccgaaaatacctcatga |
23165001 |
T |
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| Q |
304 |
ttttatcatctataaagttgagatccaatagttgaggcctcgcctaggctacgattggatgacgcgacacattttctaggggggatggaaaccttgttgg |
403 |
Q |
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| T |
23165000 |
ttttatcatctataaagttgagatccaatagttgaggcctcgcctaggctacgattggatgacgccacacattttctagcggggatggaaaccttgttga |
23164901 |
T |
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| Q |
404 |
gcatggagttgaggtgggggaatttccatggcggctctaagttcggatcacctttgcttctcc |
466 |
Q |
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| T |
23164900 |
gcatggacttgaggtgggggaatttccatggcggctctaagttcagatcaccattgtttctcc |
23164838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 23165311 - 23165139
Alignment:
| Q |
16 |
cccaatgctttcataacatcatgagagaattaagaaagaagctgccatcaaattggtgagtttgtgtatttctttattgttaagatctttttgatttgga |
115 |
Q |
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| T |
23165311 |
cccaatgctttcataacatcatgagagaattaagaaagaagctgccatcaaattggtgagtttgtgtatttctttattgttaagatctttttgatttgga |
23165212 |
T |
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| Q |
116 |
aaaatcttcatctttgcattattttggttagacaaaaattacttgtatgttataattgataaaaacttgtttg |
188 |
Q |
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| T |
23165211 |
aaaatcttcatctttgcattattttggttagacaaaaattacttgtatgttataattgataaaaacttttttg |
23165139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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