View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19710_low_6 (Length: 392)
Name: NF19710_low_6
Description: NF19710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19710_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 37697438 - 37697812
Alignment:
| Q |
1 |
gttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37697438 |
gttggtgaagtcgatccgtaatagggttttcatatttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtaatcaa |
37697537 |
T |
|
| Q |
101 |
gattggtgagtttggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
37697538 |
gattggtgagtttggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaaatcgtcaagaaaagggaggttagtgatggaggg |
37697637 |
T |
|
| Q |
201 |
tggaaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgggtcgcatgagacacccttccatttgtcgttgcagcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697638 |
tggaaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagtcgcatgagacacccttccatttgtcgttgcagcag |
37697737 |
T |
|
| Q |
301 |
tcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcctttttgatttggagtaaggcttct |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37697738 |
tcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttct |
37697812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 38013642 - 38013277
Alignment:
| Q |
7 |
gaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattgg |
106 |
Q |
| |
|
||||||||| ||||| || ||||| |||| ||| || |||||||||||||||||||||||| |||| |||| |||||||||||||||| ||| || |
|
|
| T |
38013642 |
gaagtcgatgcgtaagagcgttttgatctgtgagagggtgtttggtatctcgccggagatgttggt---gtat--ctgagggtgaggtacttaagttt-- |
38013550 |
T |
|
| Q |
107 |
tgagtttggagatggacggtggga---tagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggagggtgg |
203 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
38013549 |
tgagtttgaagatggacggtgggaggatagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtgg |
38013450 |
T |
|
| Q |
204 |
aaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggt------------ctgggtcgcatgagacacccttccatttgtcg |
291 |
Q |
| |
|
|| ||||||||||||||| |||| |||| |||||| ||||||| | ||||||| ||| || |||||||||||| |||||||||| | |
|
|
| T |
38013449 |
aattggaacaggtttaggtaggtcaaggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttgttg |
38013350 |
T |
|
| Q |
292 |
ttgcagcaatcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcctttttgatttggagta |
367 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||| |
|
|
| T |
38013349 |
ttgcagcagtc--tgt-gtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagta |
38013277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 37993802 - 37993755
Alignment:
| Q |
315 |
atcccatgaagagagtttggttgggttgccaaattcctttttgatttg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37993802 |
atcccatgaagagagtttggttgggttgccaaattgttttttgatttg |
37993755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 37989616 - 37989560
Alignment:
| Q |
311 |
ttggatcccatgaagagagtttggttgggttgccaaattcctttttgatttggagta |
367 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||| || || |||||||||| |
|
|
| T |
37989616 |
ttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagta |
37989560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 37994093 - 37994043
Alignment:
| Q |
22 |
tagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggt |
72 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37994093 |
tagggttttgatctctgagagagtgttaggtatctcgccggagatgttggt |
37994043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 25326518 - 25326308
Alignment:
| Q |
22 |
tagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagtttggagatgg |
121 |
Q |
| |
|
||||||||| |||| ||| || | |||||||||||||||||||||||| || | |||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
25326518 |
tagggttttaatctgtgagagtgagtttggtatctcgccggagatgcttgtgccg-----ctgatgatgaggacctcaagtttggtgagtttggagatgg |
25326424 |
T |
|
| Q |
122 |
acggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtg---atggagggtggaaatggaacaggttt |
218 |
Q |
| |
|
| || ||||||||||| ||||||||||||||| | || ||||| || | |||||||||||||||| ||||||||||||| | |||| |||| |
|
|
| T |
25326423 |
aaggcgggatagtgccaacgaggttggggatgttgtcgatagagagaaagtttatgaaagggaggttagtgaatatggagggtggaatttgaacgtgttt |
25326324 |
T |
|
| Q |
219 |
agggaggttgaggtcg |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25326323 |
ggggaggttgaggtcg |
25326308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University