View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_high_11 (Length: 274)
Name: NF19711_high_11
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 3005297 - 3005055
Alignment:
| Q |
14 |
atatatccatccactaattaacaacatttcttcctcctaacaaaacaaggaaattcaccgatcatcattccagaaatcatgaaaagctttaccatctttg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
3005297 |
atatatccatccacaaattaacaacatttcttcctcctaacaaaacaaggaaattcaccgatcatcattccagaaattatcaaaagctttaccatctttg |
3005198 |
T |
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| Q |
114 |
gtgatcacaaaagaagacagaagcaaatcatcaaacaaccttctgcaccatcttcactcatctccatgcatgcttccatttcttttgttgagcaagcaag |
213 |
Q |
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| T |
3005197 |
gcaatcacaaaagaagacaaaaacaaatcatcaaacaaccttctgcaccatcttcactcatctccatgcatgcttccatttcttttgttgagcaagcaag |
3005098 |
T |
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| Q |
214 |
cttgtctaactctacagctagcaggtatttgcttaacataagcaaac |
260 |
Q |
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||||| ||||||||| ||||||||||||||||| |||||||||| |
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| T |
3005097 |
cttgtataactctac----agcaggtatttgcttaatataagcaaac |
3005055 |
T |
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