View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_high_12 (Length: 270)
Name: NF19711_high_12
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 54793992 - 54793739
Alignment:
| Q |
1 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793992 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttct |
54793893 |
T |
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| Q |
101 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793892 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
54793793 |
T |
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| Q |
201 |
agcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaa |
254 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54793792 |
agcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaa |
54793739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 54775647 - 54775900
Alignment:
| Q |
1 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54775647 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttct |
54775746 |
T |
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| Q |
101 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
200 |
Q |
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| T |
54775747 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
54775846 |
T |
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| Q |
201 |
agcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaa |
254 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54775847 |
agcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaa |
54775900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 52286673 - 52286420
Alignment:
| Q |
1 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttct |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52286673 |
tacccaccacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttct |
52286574 |
T |
|
| Q |
101 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
200 |
Q |
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||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
52286573 |
catcttcctcattcatgactgactgtgtcaatataatagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacacag |
52286474 |
T |
|
| Q |
201 |
agcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaa |
254 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||| ||||||| |
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| T |
52286473 |
agcatgtctttatggtacataccacatggctatcattctctctgacgactttaa |
52286420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 801836 - 801614
Alignment:
| Q |
1 |
tacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttct |
100 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| || ||||| |
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| T |
801836 |
tacccaccacttgggttgtactcgttaacttcttttaaggctgttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttct |
801737 |
T |
|
| Q |
101 |
catcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacag |
200 |
Q |
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|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| ||||| || |||| ||| ||||||||||| |
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| T |
801736 |
catcttcctcatctataactgactgtgtcaatacaacaatattaccgtgttaattattacactatttctctattgaggcttagccactccaaaaacacag |
801637 |
T |
|
| Q |
201 |
agcatgtctttatggtacatacc |
223 |
Q |
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|||||| ||||| |||||||||| |
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| T |
801636 |
agcatggctttagggtacatacc |
801614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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