View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19711_high_14 (Length: 246)
Name: NF19711_high_14
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 36184714 - 36184501
Alignment:
| Q |
14 |
atatgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184714 |
atatgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccaa |
36184615 |
T |
|
| Q |
114 |
acatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttgtttttctgttaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184614 |
acatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttgtttttctgttaa |
36184515 |
T |
|
| Q |
214 |
atgcttgtgcttgt |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36184514 |
atgcttgtgcttgt |
36184501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 36207898 - 36207689
Alignment:
| Q |
14 |
atatgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccag |
113 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
36207898 |
atatgaaggttgataaattaatacaattatcagagacatgacatgatttctcttccaaccagtgtgttagaagtagagttgatgaaaatttgaagtccaa |
36207799 |
T |
|
| Q |
114 |
acatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttgtttttctgttaa |
213 |
Q |
| |
|
||||| | |||||| ||| ||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36207798 |
acatgcacatcatatcgaaaacaccatgttggagagatt----agaggttcacatgtgatttgttgttgtatatgaactaagattttgtttttctgttaa |
36207703 |
T |
|
| Q |
214 |
atgcttgtgcttgt |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36207702 |
atgcttgtgcttgt |
36207689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 36188550 - 36188344
Alignment:
| Q |
16 |
atgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagac |
115 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||||||||||||||||| | |||||||| |||| ||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
36188550 |
atgaaggttcataaattgatacaattgtgagagacatgacatgattct-cttccaacaagagcgtttgtagcagagatgatgaaaatcataagtccaaac |
36188452 |
T |
|
| Q |
116 |
atgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgcttt-gttgttgtagatgaactaagattttgtttttctgttaaa |
214 |
Q |
| |
|
||| | ||| | |||| ||||||||||||||||||||||| ||| | ||||||||| || | | ||||||||||||||||||| | |||||| ||| |
|
|
| T |
36188451 |
atgcacatcgtttggaaaacaccatgttggagagattagag----gttgagaagtgcttttgtaggtatagatgaactaagattttg-tattctgtcaaa |
36188357 |
T |
|
| Q |
215 |
tgcttgtgcttgt |
227 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
36188356 |
tgcttgtgtttgt |
36188344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 36196868 - 36196662
Alignment:
| Q |
16 |
atgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagac |
115 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||||||||||||||||| | |||||||| |||| ||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
36196868 |
atgaaggttcataaattgatacaattgtgagagacatgacatgattct-cttccaacaagagcgtttgtagcagagatgatgaaaatcataagtccaaac |
36196770 |
T |
|
| Q |
116 |
atgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgcttt-gttgttgtagatgaactaagattttgtttttctgttaaa |
214 |
Q |
| |
|
||| | ||| | |||| ||||||||||||||||||||||| ||| | ||||||||| || | | ||||||||||||||||||| | |||||| ||| |
|
|
| T |
36196769 |
atgcacatcgtttggaaaacaccatgttggagagattagag----gttgagaagtgcttttgtaggtatagatgaactaagattttg-tattctgtcaaa |
36196675 |
T |
|
| Q |
215 |
tgcttgtgcttgt |
227 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
36196674 |
tgcttgtgtttgt |
36196662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 36201029 - 36200829
Alignment:
| Q |
26 |
ataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagacatgaatatca |
125 |
Q |
| |
|
||||| ||| ||| ||||||||||||||| ||||||| | |||| |||||| |||| ||||||||||||| ||||| || ||| || ||||| | |||| |
|
|
| T |
36201029 |
ataaattgacacagttatcagagacatgatatgatttcttttcctactagactgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatca |
36200930 |
T |
|
| Q |
126 |
tacggaagacaccatgttggagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttg---tttttctgttaaatgcttgtg |
222 |
Q |
| |
|
|| |||| ||||||||||||| |||| || |||| ||| ||||| ||||| ||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
36200929 |
tatggaaagcaccatgttggagtgatt----agtggttgacaggtgctgtgttggtgtagatgaactaagattttgttttttttctgtcaaacgcttgtg |
36200834 |
T |
|
| Q |
223 |
cttgt |
227 |
Q |
| |
|
||||| |
|
|
| T |
36200833 |
cttgt |
36200829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 36209962 - 36209786
Alignment:
| Q |
45 |
agagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagacatgaatatcatacggaagacaccatgttg |
144 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| ||| | ||||||| |||||||||||||||||| | ||||| | ||| | |||| ||||||||||| |
|
|
| T |
36209962 |
agagacatggcatgatttt-cttccaacaagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttg |
36209864 |
T |
|
| Q |
145 |
gagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttgtttttctgttaaatgcttgtgcttgt |
227 |
Q |
| |
|
|||||||| ||||||| | |||||||||| ||| ||||||||||||||||||| | |||||| ||||||||||| |||| |
|
|
| T |
36209863 |
gagagatt----agaggttgagaagtgctttgcagttatagatgaactaagattttg-tattctgtcaaatgcttgtgtttgt |
36209786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 36213325 - 36213215
Alignment:
| Q |
16 |
atgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagac |
115 |
Q |
| |
|
||||||| | ||||| |||| ||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||||||| ||||| ||||||||| || |
|
|
| T |
36213325 |
atgaaggctcataaattgattcaattatcagagacatgacatgattct-cttcaaactaaagtgtttgaagcagagttgataaaaatttgaagtccaaac |
36213227 |
T |
|
| Q |
116 |
atgaatatcata |
127 |
Q |
| |
|
||| | |||||| |
|
|
| T |
36213226 |
atgcacatcata |
36213215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 36202424 - 36202321
Alignment:
| Q |
16 |
atgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccagac |
115 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||| |||| | | |||| ||||||| ||| ||||||||| |||||||||||||||||| | || |
|
|
| T |
36202424 |
atgaaggttcataaattgatacaattgtcagagacatgaaatgaatct-cttcttactagagcgtttgaagcagagatgatgaaaatctgaagtcgaaac |
36202326 |
T |
|
| Q |
116 |
atgaa |
120 |
Q |
| |
|
||||| |
|
|
| T |
36202325 |
atgaa |
36202321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University