View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_high_16 (Length: 236)
Name: NF19711_high_16
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48172120 - 48171898
Alignment:
| Q |
1 |
caatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagc |
100 |
Q |
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| T |
48172120 |
caatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagc |
48172021 |
T |
|
| Q |
101 |
catgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttccacttctcctcctccagaagctgttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172020 |
catgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttccacttctcctcctccagaagctgttcct |
48171921 |
T |
|
| Q |
201 |
gcacctcttccacctcccaattg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
48171920 |
gcacctcttccacctcccaattg |
48171898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 35288401 - 35288547
Alignment:
| Q |
29 |
agatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcg |
128 |
Q |
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|||||||||||||||| ||| || ||| | | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
35288401 |
agatatggcagatccacttctcaacaaacaattcccagaaaaggatcttaatcaagctgttgcaatagcagccatgtgcttacaagaggaaccagaagct |
35288500 |
T |
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| Q |
129 |
cgtcctttgatgagtgatgttgtaactgctttgagttttctttccac |
175 |
Q |
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||||||||||| | || ||||| || ||| |||||||||||||||| |
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| T |
35288501 |
cgtcctttgatcggcgacgttgtgaccgctctgagttttctttccac |
35288547 |
T |
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