View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_1 (Length: 675)
Name: NF19711_low_1
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_1 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 9 - 675
Target Start/End: Complemental strand, 54794881 - 54794215
Alignment:
| Q |
9 |
caagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgacagacaggaacaattgaaaggctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54794881 |
caagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctc |
54794782 |
T |
|
| Q |
109 |
aaggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794781 |
aaggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactt |
54794682 |
T |
|
| Q |
209 |
atcttatttgacaaacttgtaaactagtttgtggttactcttggtaaagcttacaacaaatatcttttatgtcattttatgttgatcagttagctcgctt |
308 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794681 |
atcttatttgacaaacttgtaaattagtttgtggttactcttggtaaagcttacaacaaatatcttttatgtcattttatgttgatcagttagctcgctt |
54794582 |
T |
|
| Q |
309 |
cctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaactgtagtctattagctactagtttaacttataaactactta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54794581 |
actaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaactatagtctattagctactagtttaacttataaactactta |
54794482 |
T |
|
| Q |
409 |
aactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcatnn |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794481 |
aactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcataa |
54794382 |
T |
|
| Q |
509 |
nnnnnnnnncccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaatt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794381 |
aaaaaaaaaaccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaatt |
54794282 |
T |
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| Q |
609 |
agcatattatttaatgctgcccccgacaaaagtctaaaagttgttacatgtgcctatgaatgcaact |
675 |
Q |
| |
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|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54794281 |
agtatattatttaatgctgcccctgacaagagtctaaaagttgttacatgtgcctatgaatgcaact |
54794215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 268 - 675
Target Start/End: Complemental strand, 52287320 - 52286896
Alignment:
| Q |
268 |
atatcttttatgtcattttatgttgatcagttagctcgcttcctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287320 |
atatcttttatgtcattttatgttgatcagttagtttgctaactaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
52287221 |
T |
|
| Q |
368 |
ctgtagtctattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacc |
467 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
52287220 |
ctgtagtccattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatggagtgtgaataaactgacccaagtcacacc |
52287121 |
T |
|
| Q |
468 |
cttgactcatttatgggaaccaatcatttcattgttcatnnnnnnnnnnncccgtagagtagattgttgtattgaattaaaatgcactattaagctatta |
567 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52287120 |
cttgactcatttatggaaaccaatcatttcattgttcataaaaaaat-----catagaatagattgatgtattgaattaaaatgcactattaagctatta |
52287026 |
T |
|
| Q |
568 |
actaat--------------tagatattagacgactttcaatataaacctaaattagcat--------attatttaatgctgcccccgacaaaagtctaa |
645 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||| |||||||| || ||||||||||||||| |||||||| ||||||| |
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| T |
52287025 |
actaattaaataactcattctagatattagacgacttttaatataaacttaaattagtatattatttaattatttaatgctgcacccgacaagagtctaa |
52286926 |
T |
|
| Q |
646 |
aagttgttacatgtgcctatgaatgcaact |
675 |
Q |
| |
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|||||||||||||||||||||| ||||||| |
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| T |
52286925 |
aagttgttacatgtgcctatgattgcaact |
52286896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 52287628 - 52287391
Alignment:
| Q |
25 |
ggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgacagacaggaacaattgaaaggctcaaggtctaacaaacca |
124 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
52287628 |
ggtgtattatatcagtcattgtttgattt-ccatcatttgcttttcaaaattatccatgacag----gaacaattgaaaggcccaaggtctaacaaacca |
52287534 |
T |
|
| Q |
125 |
aataccttttga-------tgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagacttatcttattt |
217 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52287533 |
aataccttttgaattttgatgcagtgattgcctagcacaggagcatcaacatatgtcaggtgtgaagcttgagtttgtttgacatagacctatcttattt |
52287434 |
T |
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| Q |
218 |
gacaaacttgtaaactagtttgtggttactcttggtaaagctt |
260 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
52287433 |
gacaaacttgtaaactaatttgtggttactcgtggtaaagctt |
52287391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 802732 - 802575
Alignment:
| Q |
52 |
tttccatcatttgcttttcaaaattatccatgacagacaggaacaattgaaaggctcaaggtctaacaaaccaaataccttttgatgcagtgattgcata |
151 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||| || | |||||| |||| ||| |
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| T |
802732 |
tttccatcttttgcttttcaaaattatccatgatagacaggagcaattgaaagcctcaagttctaacaaaccaaatagctgtcaatgcagcaattgaata |
802633 |
T |
|
| Q |
152 |
gcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
209 |
Q |
| |
|
|||||||||| ||| ||| || ||||| |||||||||||||||||||| ||||||| |
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| T |
802632 |
acacaggagcaccaatatatgtgaggtgcaaagcttgagtttgtttgacaaagactta |
802575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 802468 - 802311
Alignment:
| Q |
268 |
atatcttttatgtcattttatgttgatcagttagctcgcttcctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
367 |
Q |
| |
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|||||||| ||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
802468 |
atatctttcatgtcattt-atgtttatcagttagttcgccaattaattctaacaaccacttgaattgcaatcaactagcttttcatttataaactttcaa |
802370 |
T |
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| Q |
368 |
ctgtagtctat--tagctactagtttaacttataaactacttaaactattgccaaataga |
425 |
Q |
| |
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|| || ||||| | |||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
802369 |
ctataatctatagttgctattag-ttaacttataaactacttacactattgccaaataga |
802311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 614 - 675
Target Start/End: Complemental strand, 802120 - 802059
Alignment:
| Q |
614 |
attatttaatgctgcccccgacaaaagtctaaaagttgttacatgtgcctatgaatgcaact |
675 |
Q |
| |
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|||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
802120 |
attatttaatactgcacccgacaagagtctaaaagttgttacatgtgcatatgaatgcaact |
802059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 802309 - 802251
Alignment:
| Q |
441 |
tgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcat |
499 |
Q |
| |
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||||||||| ||| |||||||| |||||| ||||| |||||| ||||||||||||||| |
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| T |
802309 |
tgtgaataacttgacccaagtcatacccttaactcaattatggaaaccaatcatttcat |
802251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 34618484 - 34618543
Alignment:
| Q |
310 |
ctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaact |
369 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||| |||||| ||||| ||||||||| |
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| T |
34618484 |
ctaattttaccaaacactttaatatcaatcaactagtttttcagctataagctttcaact |
34618543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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