View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_10 (Length: 353)
Name: NF19711_low_10
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 5121314 - 5120996
Alignment:
| Q |
18 |
atgatttatgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactc |
117 |
Q |
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| T |
5121314 |
atgatttatgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactc |
5121215 |
T |
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| Q |
118 |
ttggagaagctgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtgaga |
217 |
Q |
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| T |
5121214 |
ttggagaagttgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtgaga |
5121115 |
T |
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| Q |
218 |
aaaacaaaaactttcattagattttttatatnnnnnnnttattaatttatataatttgaagcattgttaattagttgagaataatagcttattacatgta |
317 |
Q |
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| T |
5121114 |
aaaacaaaaactttcattagattttttatataaaaaaattattaatttatataatttgaagcattgttaattagttgagaataatagcttattacatgta |
5121015 |
T |
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| Q |
318 |
tgatatgtttgttttattt |
336 |
Q |
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| T |
5121014 |
tgatatgtttgttttattt |
5120996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 40819325 - 40819213
Alignment:
| Q |
62 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactcttggagaagctgccaagcgttaaactaaacatgctcctctctta |
161 |
Q |
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| T |
40819325 |
aattttttattctatttttcacgtctttccctgaacacacacatgtaatccaactcttcgagaaattgtctagcactaaactaaatatgctcctttctta |
40819226 |
T |
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| Q |
162 |
agatagatttgaa |
174 |
Q |
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| T |
40819225 |
acatatatttgaa |
40819213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 9516263 - 9516320
Alignment:
| Q |
62 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactctt |
119 |
Q |
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|||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| |
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| T |
9516263 |
aattttttattctatttttcacgtctttcccttaacacacacatgtaatccaactctt |
9516320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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