View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19711_low_11 (Length: 350)

Name: NF19711_low_11
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19711_low_11
NF19711_low_11
[»] chr8 (2 HSPs)
chr8 (12-339)||(28385118-28385448)
chr8 (72-183)||(32975928-32976040)
[»] chr2 (4 HSPs)
chr2 (81-213)||(32592464-32592597)
chr2 (81-194)||(39659588-39659701)
chr2 (157-210)||(42420356-42420410)
chr2 (81-209)||(41407178-41407309)
[»] chr6 (3 HSPs)
chr6 (81-145)||(35069439-35069503)
chr6 (81-213)||(24626172-24626306)
chr6 (127-194)||(30536637-30536705)
[»] chr5 (5 HSPs)
chr5 (81-213)||(13697817-13697952)
chr5 (125-213)||(16458038-16458127)
chr5 (81-145)||(9202867-9202931)
chr5 (166-213)||(16937942-16937990)
chr5 (82-146)||(7319139-7319203)
[»] chr3 (9 HSPs)
chr3 (81-213)||(30956685-30956819)
chr3 (81-213)||(30972497-30972631)
chr3 (132-213)||(5331222-5331304)
chr3 (132-213)||(29520538-29520620)
chr3 (117-213)||(12862307-12862404)
chr3 (165-213)||(20170485-20170534)
chr3 (75-136)||(28240207-28240268)
chr3 (76-105)||(28796001-28796030)
chr3 (117-213)||(4400959-4401058)
[»] chr1 (7 HSPs)
chr1 (81-213)||(33541767-33541901)
chr1 (155-213)||(7927793-7927852)
chr1 (125-213)||(42391287-42391376)
chr1 (81-213)||(51688582-51688716)
chr1 (173-213)||(17603443-17603484)
chr1 (81-193)||(47498916-47499026)
chr1 (139-213)||(38578462-38578538)
[»] chr7 (4 HSPs)
chr7 (81-213)||(9210505-9210638)
chr7 (133-214)||(420289-420372)
chr7 (157-215)||(40009424-40009483)
chr7 (132-213)||(45806536-45806619)
[»] chr4 (3 HSPs)
chr4 (166-213)||(9760403-9760451)
chr4 (157-213)||(54069476-54069533)
chr4 (81-145)||(44863081-44863145)
[»] scaffold0012 (1 HSPs)
scaffold0012 (109-184)||(207670-207746)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 28385118 - 28385448
Alignment:
Q  12 ataggtagataatctcggtctcacatgtgcacaaatgttaatatatgtaccattataatagtctatttagataaacaacttatttacagcttattgaaca 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385118 ataggtagataatctcggtctcacatgtgcacaaatgctaatatatgtaccattataatagtctatttagataaacaacttatttacagcttattgaaca 28385217  T
Q  112 agtgtttataattataagtgcttatgcataagcttgtataaatta--ttttataacaaaagacaaaataacgttaaattcttttttatatgctataagtt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28385218 agtgtttataattataagtgcttatgcataagcttgtataaattattttttataacaaaagacaaaataacgttaaattcttttatatatgctataagtt 28385317  T
Q  210 g-tttcttatatatgtgttgttaaagtgaaagtcgtcgcagacgtcgactcttagatagtgtggcaatgttacgagtctcacttgaagtagataaaaatg 308  Q
    | ||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  28385318 gtttttttatatatgtgtttttaaagtgaaagtcgtcgcagacgtcgactcttaaataatatggcaatgttacgagtctcacatgaagtagataaaaatg 28385417  T
Q  309 tttaaaccacgaccctctaccatctaattga 339  Q
    ||| |||||| ||||||| ||| ||||||||    
T  28385418 ttttaaccacaaccctctcccacctaattga 28385448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 32975928 - 32976040
Alignment:
Q  72 gtctatttagataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattatttt-ataacaaaag 170  Q
    |||| ||||||||||||| | |||| |||||||  | |||||   |||| || ||||||||||||  ||||||||| ||||  |||||| ||| ||||||    
T  32975928 gtctgtttagataaacaagtgattttcagcttagagcacaagcagttattatgataagtgcttatatataagcttgcataagctatttttatagcaaaag 32976027  T
Q  171 acaaaataacgtt 183  Q
    | |||||||||||    
T  32976028 ataaaataacgtt 32976040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 32592464 - 32592597
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattatttt-ataacaaaagacaaaataa 179  Q
    ||||||||||||||||  ||||||| | ||||    |||| |||||||| ||||||| ||||||||| ||||| |||||| |||  |||||| |||||||    
T  32592464 gataaacaacttatttgtagcttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataa 32592563  T
Q  180 cgttaaattcttttttatatgctataagttgttt 213  Q
     |||||||| |||| |||| ||||||||||||||    
T  32592564 tgttaaattgttttgtatacgctataagttgttt 32592597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 39659701 - 39659588
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattttataacaaaagacaaaataac 180  Q
    |||||||||||||||| |||||||  | |||| || |||| || ||||| ||||||| ||||| ||| ||| | ||||||||||||||||| | ||||||    
T  39659701 gataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtataagtttggatacactattttataacaaaagatacaataac 39659602  T
Q  181 gttaaattcttttt 194  Q
    |||||||| |||||    
T  39659601 gttaaattgttttt 39659588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 42420410 - 42420356
Alignment:
Q  157 ttttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttg 210  Q
    ||||||| ||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  42420410 ttttatagcaaaagataaaataacgttaaattgtttttgtatatgatataagttg 42420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 41407178 - 41407309
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattt-tataacaaaagacaaaataa 179  Q
    |||||||| ||| ||| |||||||| | ||||| | |||| || |||||  |||||| ||||||||  ||||  ||||| | || ||||||| |||||||    
T  41407178 gataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagcttacataagctatttctgtaccaaaagataaaataa 41407277  T
Q  180 cgttaaattctttttt--atatgctataagtt 209  Q
     |||||||| ||||||  ||||||||||||||    
T  41407278 agttaaattgttttttgtatatgctataagtt 41407309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 35069439 - 35069503
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagct 145  Q
    |||||||||||||||| |||||||| | ||||| |||||| || |||||||||||||||||||||    
T  35069439 gataaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagct 35069503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 24626172 - 24626306
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattt-tataacaaaagacaaaataa 179  Q
    ||||||||||||||||||||||||| | |||| || |||| || || | |||||||| ||||||||  ||||  ||||| ||||  ||| || |||| ||    
T  24626172 gataaacaacttatttacagcttatagcacaaatgcttatcatgatgattgcttatgtataagcttacataagctatttctataggaaaggataaaacaa 24626271  T
Q  180 cgttaaattcttttt-tatatgctataagttgttt 213  Q
     |||||||| ||||| ||||| |||||||||||||    
T  24626272 agttaaattgtttttgtatattctataagttgttt 24626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 30536705 - 30536637
Alignment:
Q  127 aagtgcttatgcataagcttgtataaattatttt-ataacaaaagacaaaataacgttaaattcttttt 194  Q
    ||||||||||| ||||||||| ||||  |||||| ||| ||||||| || ||||||||||||| |||||    
T  30536705 aagtgcttatgtataagcttgcataagctatttttatagcaaaagataagataacgttaaattgttttt 30536637  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 13697952 - 13697817
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaatta-ttttataacaaaagacaaaataa 179  Q
    |||||||||||||||| ||||||||   | |||  ||||| || ||||||| || ||||||| |||| |||||||| ||||||| ||||||| |||||||    
T  13697952 gataaacaacttatttgcagcttataacataagcatttatcatgataagtgattttgcataaacttgcataaattatttttatagcaaaagataaaataa 13697853  T
Q  180 cgttaaa--ttcttttttatatgctataagttgttt 213  Q
     ||||||  || ||||||||||  ||||||||||||    
T  13697852 tgttaaatttttttttttatatattataagttgttt 13697817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 16458127 - 16458038
Alignment:
Q  125 ataagtgcttatgcataagcttgtataaattatttt-ataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    ||||||||||||  ||||||||| ||||  |||||| ||| ||||||| |||||||| ||||||| ||||| |||||||||||||||||||    
T  16458127 ataagtgcttatatataagcttgcataagctatttttatagcaaaagataaaataac-ttaaattgtttttgtatatgctataagttgttt 16458038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 9202931 - 9202867
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagct 145  Q
    |||||||| ||||||| |||||||| | |||||||||||| || ||||||||||||  |||||||    
T  9202931 gataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagct 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 16937990 - 16937942
Alignment:
Q  166 aaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  16937990 aaaagataaaataacgttaaattgtttttgtatatgctataagttgttt 16937942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 7319203 - 7319139
Alignment:
Q  82 ataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagctt 146  Q
    ||||||| |||||||||||||||| | ||||| | |||| || |||||  |||||||||||||||    
T  7319203 ataaacagcttatttacagcttatagcacaagcgcttatcatgataagcacttatgcataagctt 7319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 30956819 - 30956685
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattt-tataacaaaagacaaaataa 179  Q
    |||||||| ||||||| |||||||| | ||||| | |||| || |||||   ||||||||||||||  ||||  ||||| |||| ||||||| |||||||    
T  30956819 gataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataaaataa 30956720  T
Q  180 cgttaaattcttttt-tatatgctataagttgttt 213  Q
     |||||||| ||||| |||| ||||||||||||||    
T  30956719 agttaaattgtttttgtataggctataagttgttt 30956685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 30972631 - 30972497
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattt-tataacaaaagacaaaataa 179  Q
    |||||||| ||||||| |||||||| | ||||| | |||| || |||||   ||||||||||||||  ||||  ||||| |||| ||||||| |||||||    
T  30972631 gataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataaaataa 30972532  T
Q  180 cgttaaattcttttt-tatatgctataagttgttt 213  Q
     |||||||| ||||| |||| ||||||||||||||    
T  30972531 agttaaattgtttttgtataggctataagttgttt 30972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 5331222 - 5331304
Alignment:
Q  132 cttatgcataagcttgtataaattattttataacaaaagacaaaataacgttaaattctt-ttttatatgctataagttgttt 213  Q
    |||||| ||||||||| ||||  ||||||||| ||||||| |||||||||||||||| || || ||  |||||||||||||||    
T  5331222 cttatgtataagcttgcataagctattttatagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgttt 5331304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 29520620 - 29520538
Alignment:
Q  132 cttatgcataagcttgtataaattattttataacaaaagacaaaataacgttaaattctt-ttttatatgctataagttgttt 213  Q
    |||||| ||||||||| ||||  ||||||||| ||||||| |||||||||||||||| || || ||  |||||||||||||||    
T  29520620 cttatgtataagcttgcataagctattttatagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgttt 29520538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 12862404 - 12862307
Alignment:
Q  117 ttataattataagtgcttatgcataagcttgtataaattatttt-ataacaaaagacaaaataacgttaaattcttttttatatgctataagttgttt 213  Q
    ||||||| |||||  ||||||  |||||||| ||||  |||||| ||| ||||||| ||||||   ||||||| |||| |||||||||||||||||||    
T  12862404 ttataatgataagcacttatgtttaagcttgcataatctatttttatagcaaaagataaaatagatttaaattgttttgtatatgctataagttgttt 12862307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 20170485 - 20170534
Alignment:
Q  165 caaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    ||||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  20170485 caaaagataaaataatgttaaattgtttttgtatatgctataagttgttt 20170534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 28240207 - 28240268
Alignment:
Q  75 tatttagataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttat 136  Q
    |||||||||||||||||||| | |||||||| | ||||| | |||| || ||||||||||||    
T  28240207 tatttagataaacaacttatctgcagcttatagcacaagcgcttatcatgataagtgcttat 28240268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 28796030 - 28796001
Alignment:
Q  76 atttagataaacaacttatttacagcttat 105  Q
    ||||||||||||||||||||||||||||||    
T  28796030 atttagataaacaacttatttacagcttat 28796001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 4400959 - 4401058
Alignment:
Q  117 ttataattataagtgcttatgcataagcttgtataaa--ttattttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    |||| ||||||||| |||||| ||||| ||| ||||   || ||||||| ||||||   ||||||||||||||| ||||  |||||||||||||||||||    
T  4400959 ttattattataagtacttatgtataagtttgcataagcttttttttataccaaaaggtgaaataacgttaaattattttcgtatatgctataagttgttt 4401058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 33541901 - 33541767
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataa-attattttataacaaaagacaaaataa 179  Q
    |||||||||||||||| ||| |||| | |||||||||||| || ||||| ||||||| ||||||||| |||| ||  ||||||| | || || | ||| |    
T  33541901 gataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttgaataagatatttttatagctaaggatataatga 33541802  T
Q  180 cgttaaattcttttt-tatatgctataagttgttt 213  Q
     |||||||||||||| || ||||| ||||||||||    
T  33541801 tgttaaattctttttgtacatgctctaagttgttt 33541767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 7927793 - 7927852
Alignment:
Q  155 tattttataacaaaagacaaaataacgttaaattcttt-tttatatgctataagttgttt 213  Q
    ||||||||||||||| | |||||||||||||| | ||| | |||||||||||||||||||    
T  7927793 tattttataacaaaaaataaaataacgttaaaatgtttgtgtatatgctataagttgttt 7927852  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 42391287 - 42391376
Alignment:
Q  125 ataagtgcttatgcataagcttgtataaatta-ttttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    ||||||||||||| |||||||||  |||| || ||||||||| ||| | |||||||| ||||||| ||||| ||||| |||||||||||||    
T  42391287 ataagtgcttatgtataagcttgcttaaactatttttataacgaaaca-aaaataacattaaattgtttttgtatattctataagttgttt 42391376  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 51688582 - 51688716
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattt-tataacaaaagacaaaataa 179  Q
    |||||||||||||||| |||||||| | ||||||| |||| || ||||||| ||||  ||||||||  || |  ||||| | ||  |||||| |||||||    
T  51688582 gataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataagcttacatgagctatttatgtaggaaaagataaaataa 51688681  T
Q  180 cgttaaattcttttt-tatatgctataagttgttt 213  Q
     | |||||| ||||| || ||||||||||||||||    
T  51688682 agataaattgtttttgtacatgctataagttgttt 51688716  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 17603484 - 17603443
Alignment:
Q  173 aaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  17603484 aaaataacgttaaattgtttttgtatatgctataagttgttt 17603443  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 47499026 - 47498916
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaattattttataacaaaagacaaaataac 180  Q
    |||||||||||||||| |||||||| | ||||||| |||| || ||||| |||| || |||||||  | |||  | ||| | ||||||||| |||||||     
T  47499026 gataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagctattttaa--tttttaacaacaaaagataaaataaa 47498929  T
Q  181 gttaaattctttt 193  Q
    |||||||| ||||    
T  47498928 gttaaattatttt 47498916  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 38578462 - 38578538
Alignment:
Q  139 ataagcttgtataaattattt-tataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    |||| |||||||||  ||||| |||||||||||| || |||| |||||||| ||||| |||| ||||||||||||||    
T  38578462 ataaacttgtataagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 9210505 - 9210638
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagcttgtataaatta-ttttataacaaaagacaaaataa 179  Q
    |||||||| ||||||| |||||||| |  |||   ||||| || ||||  ||||||| ||||||||| ||||  || |||||||  |||| | ||||| |    
T  9210505 gataaacagcttatttgcagcttatagcgcaaacatttatcatgataatcgcttatgtataagcttgcataagctacttttatagaaaaaaataaaatga 9210604  T
Q  180 cgttaaattcttttttatatgctataagttgttt 213  Q
     |||||||||||||||||||||||||||||||||    
T  9210605 tgttaaattcttttttatatgctataagttgttt 9210638  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 420289 - 420372
Alignment:
Q  133 ttatgcataagcttgtataaattat-tttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgtttc 214  Q
    ||||| ||||||||| ||||  ||| |||||| ||||||| ||||||| ||| |||| ||||| ||||||||||||||||||||    
T  420289 ttatgtataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgtttc 420372  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 40009424 - 40009483
Alignment:
Q  157 ttttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgtttct 215  Q
    ||||||||||||||||||||||| |||||||| |||||  |||  |||||||||||||||    
T  40009424 ttttataacaaaagacaaaataaagttaaattgtttttccataatctataagttgtttct 40009483  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 45806619 - 45806536
Alignment:
Q  132 cttatgcataagcttgtataaattat-tttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    |||||| ||||||||| ||||  ||| |||||| ||||||| |||||||||||||||| ||||| ||  |||||||||||||||    
T  45806619 cttatgtataagcttgcataagctatgtttatagcaaaagagaaaataacgttaaattgtttttctaattgctataagttgttt 45806536  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 9760403 - 9760451
Alignment:
Q  166 aaaagacaaaataacgttaaattctttttt-atatgctataagttgttt 213  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  9760403 aaaagataaaataaagttaaattcttttttaatatgctataagttgttt 9760451  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 54069533 - 54069476
Alignment:
Q  157 ttttataacaaaagacaaaataacgttaaattcttttt-tatatgctataagttgttt 213  Q
    ||||||| ||||||| ||||||| |||||||| ||||| |||||||||||| ||||||    
T  54069533 ttttatatcaaaagataaaataatgttaaattgtttttgtatatgctataatttgttt 54069476  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 44863145 - 44863081
Alignment:
Q  81 gataaacaacttatttacagcttattgaacaagtgtttataattataagtgcttatgcataagct 145  Q
    |||||||||||||||| |||||||| | |||||   || | || |||||||||||||||||||||    
T  44863145 gataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagct 44863081  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 207746 - 207670
Alignment:
Q  109 acaagtgtttataattataagtgcttatgcataagcttgtataaattatttta-taacaaaagacaaaataacgtta 184  Q
    ||||||| |||| || |||||  |||||| ||||||||| ||||  ||||||| |||||||||| ||||||||||||    
T  207746 acaagtgcttatcatgataagcacttatgtataagcttgcataagctattttagtaacaaaagataaaataacgtta 207670  T

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