View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_12 (Length: 347)
Name: NF19711_low_12
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 52546318 - 52546633
Alignment:
| Q |
1 |
gtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaaatttccacaagtac |
100 |
Q |
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| T |
52546318 |
gtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaagtttcgacaagtac |
52546417 |
T |
|
| Q |
101 |
cttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccacaagtcagctagtctattaacttggttactaagtgttgg |
200 |
Q |
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| T |
52546418 |
cttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccgcaagtcagctag----------------ctaagtgttgg |
52546501 |
T |
|
| Q |
201 |
ctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaaataa |
300 |
Q |
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| T |
52546502 |
ctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaaataa |
52546601 |
T |
|
| Q |
301 |
tttccacttgggttcaaccatgacctaggaac |
332 |
Q |
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| T |
52546602 |
tttccacttgggttcaaccatgacctaggaac |
52546633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 5233291 - 5233244
Alignment:
| Q |
237 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
284 |
Q |
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| T |
5233291 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
5233244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 42986470 - 42986534
Alignment:
| Q |
247 |
accaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgg |
311 |
Q |
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|||||| |||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||| |
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| T |
42986470 |
accaaaaatatcccattagggtctccacccaattcttcaaacacaaccaataaatttccagttgg |
42986534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 17129188 - 17129129
Alignment:
| Q |
237 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaa |
296 |
Q |
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|||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
17129188 |
tgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaa |
17129129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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