View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_13 (Length: 285)
Name: NF19711_low_13
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 10011145 - 10011391
Alignment:
| Q |
39 |
atggaagaaagaccaatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtcttt |
138 |
Q |
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| T |
10011145 |
atggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtcttt |
10011244 |
T |
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| Q |
139 |
ttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattc |
238 |
Q |
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| T |
10011245 |
ttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattc |
10011344 |
T |
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| Q |
239 |
atatcagtnnnnnnntagaacaccaccacagagcttggatttggaca |
285 |
Q |
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| T |
10011345 |
atatcagtaaaaaaatagaacaccaccacagagcttggatttggaca |
10011391 |
T |
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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
78 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
165 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
78 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
165 |
Q |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaatttttt-ctttaaaattgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
78 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
165 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||| || ||||||||| |||| |||||||||||||||||||||||| |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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