View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_19 (Length: 245)
Name: NF19711_low_19
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_19 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 29743172 - 29743082
Alignment:
| Q |
148 |
tataccactataaaaccccaaacaaatgttcaacaatccctctaagtgaccacaaacatactccattttattacatttacaccccctccta |
238 |
Q |
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| T |
29743172 |
tataccactataaaaccccaaactaatgttcaacaatccctccaagtgaccacaaacacagtccaatttattacatttacaccccctccta |
29743082 |
T |
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Target: scaffold0009 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 146705 - 146646
Alignment:
| Q |
1 |
tattcaaggggggattttctagacaaaagtaggtctctctttcacattgaatccttgtaa |
60 |
Q |
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| T |
146705 |
tattcaaggggggattttgtagacaaaagtaggtctctctttcacattgaatccttgtaa |
146646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 146528 - 146471
Alignment:
| Q |
181 |
caatccctctaagtgaccacaaacatactccattttattacatttacaccccctccta |
238 |
Q |
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| T |
146528 |
caatccctctaagtgaccacaatcatactccattttattacatttacaccccctccta |
146471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 146651 - 146555
Alignment:
| Q |
86 |
ttgtaaattatatatattatgttcacattgatannnnnnnnnnngtcctagaaaaatatctatataccactataaaaccccaaacaaatgttcaacaatc |
185 |
Q |
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| T |
146651 |
ttgtaaattatatatattatgttcacattgatatttttttttt-gttctagaaaaacatctata--ccactataaaaccccaaacaaatgttcaacaatc |
146555 |
T |
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