View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19711_low_2 (Length: 551)

Name: NF19711_low_2
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19711_low_2
NF19711_low_2
[»] chr4 (8 HSPs)
chr4 (11-535)||(9000127-9000651)
chr4 (11-440)||(9030568-9030997)
chr4 (11-432)||(8979062-8979483)
chr4 (11-431)||(8954727-8955147)
chr4 (24-429)||(8966230-8966635)
chr4 (11-415)||(8900539-8900943)
chr4 (19-415)||(8914452-8914848)
chr4 (19-415)||(8929374-8929770)
[»] chr5 (2 HSPs)
chr5 (11-415)||(20073998-20074402)
chr5 (11-415)||(9400236-9400640)
[»] scaffold0287 (1 HSPs)
scaffold0287 (268-391)||(15566-15689)
[»] chr7 (1 HSPs)
chr7 (268-391)||(3630396-3630519)


Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 9000127 - 9000651
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||    
T  9000127 caaagggtattagttcaaaatcttgtccattaaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtc 9000226  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||  || |      
T  9000227 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtaga 9000326  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  9000327 ggggctggtaggtgcaatcttagcgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctccca 9000426  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9000427 aatttctaatttcatcttgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 9000526  T
Q  411 tacaataatatcctacaaagaagtgctttatgagttaacaaatgaaaaatattccaaaaacttgaacatttaaaaatctaaattacattttcaatttgtt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9000527 tacaataatatcctacaaagaagtgctttatgagttaacaaatgaaaaatattccaaaaacttgaacatttaaaaatctaaattacattttcaatttgtt 9000626  T
Q  511 aagatgacatataaggtataataac 535  Q
    ||||||||||||||||||| |||||    
T  9000627 aagatgacatataaggtatcataac 9000651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 9030997 - 9030568
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030997 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 9030898  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030897 tctctgaatagcccaagcattcacatacaatattgtcctggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 9030798  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| | |||||| ||| |||||    
T  9030797 ggggctggtagatgcaatcttaacgtctctttaatcactgcattcaaataaggtaaattttgaagatcaccttcatctaaataatcttttgcacctccca 9030698  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    ||||||| ||||| || ||||||||   || |||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| | ||    
T  9030697 agtttctgatttcttcttgtactttatccaatactcttgggtttttcattagggcggtcatagcccaaactgatgcggctgatgtggtatctgttgcggc 9030598  T
Q  411 tacaataatatcctacaaagaagtgcttta 440  Q
    ||||||  ||||||||||||| ||||||||    
T  9030597 tacaatcgtatcctacaaagaggtgcttta 9030568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 8979483 - 8979062
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||| || ||||||||||||||||  |||| ||||  |||| | ||    
T  8979483 caaagggtattagttcgaaatcatgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatc 8979384  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    ||| |||||||||||  | || |||||||||||||| | ||||||||||||||| ||||| ||| ||||  |||| | ||||||||| |  |  |||| |    
T  8979383 tctttgaatagcccagacgtttacatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagt 8979284  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    || |||||||| | ||||||||| |||||||| |||||||||||||||||  |  |||||||||||||||||||||||||||| ||||||| || |||||    
T  8979283 ggagctggtaggtacaatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctccca 8979184  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    |||| |||||||| || || ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  8979183 agttcctaatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctgatgtagtatctgttgcagc 8979084  T
Q  411 tacaataatatcctacaaagaa 432  Q
    |||||  |||| ||||||||||    
T  8979083 tacaagcatattctacaaagaa 8979062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 8955147 - 8954727
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||| ||   | ||    
T  8955147 caaagggtattagttcaaagtcttgtccaataaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatc 8955048  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    ||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||| |||| || |||||||||   ||||| || | ||  || | |    
T  8955047 tctctgaatagcccaagcatttacatataatattgtctttgcaggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagt 8954948  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    ||||||||||| || |||||||  ||||||||||  |  ||||||||||||||  ||||||||||||||||||||| |||||| ||||||| |  |||||    
T  8954947 ggggctggtaggtgtaatcttagtgtctctttaactatagccttcaaataaggacaattttgaatatcatcttcatataaaaaatcttttttaactccca 8954848  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    | ||||| ||||| || | |||||| ||||||||||| |||||||| ||||  ||||||||||||||||||||||  |||| ||||||||| ||| ||||    
T  8954847 aatttcttatttcttcttttactttactcattactctagggttttttattagagcagtcatagcccaaactgatgctgctgatgtggtatcggttgcagc 8954748  T
Q  411 tacaataatatcctacaaaga 431  Q
    |||||  ||||||| ||||||    
T  8954747 tacaagcatatcctgcaaaga 8954727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 24 - 429
Target Start/End: Original strand, 8966230 - 8966635
Alignment:
Q  24 ttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcc 123  Q
    ||||||||||||||||  ||||||  | |||| ||| |||||||| || |||||||| |||||||  |||| ||||  | |  ||||||| |||||||||    
T  8966230 ttcaaaatcttgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcc 8966329  T
Q  124 caagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagat 223  Q
    |||||||||||||||| |||||| ||||||||||| ||||| ||| ||||| |||| ||||| | ||||||||| |  |  || | |||||  ||||| |    
T  8966330 caagcattcacatacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggt 8966429  T
Q  224 gcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttc 323  Q
    ||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||| ||| ||||  |||||||||| || ||||||||||||||||||    
T  8966430 gcaatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttc 8966529  T
Q  324 atcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagctacaataatatcc 423  Q
     || ||||||||| ||||||||||||||||||| || | ||  || ||||||||||||||||||||||||||||| |||||| |||||||||  || |||    
T  8966530 ttcttgtactttcttcattactcttgggttttttatcagggaggttatagcccaaactgatgtggctgctgtggtgtctgttgcagctacaagcatgtcc 8966629  T
Q  424 tacaaa 429  Q
    ||||||    
T  8966630 tacaaa 8966635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 8900539 - 8900943
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||   ||||    
T  8900539 caaagggaattagttcaaaatcttgtccataaaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtc 8900638  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    | | ||||||||||||||||||||| |||  || | ||| || ||||| | ||| ||| ||||| |||| ||||| | || |||||| | ||  ||||||    
T  8900639 tgtatgaatagcccaagcattcacaaacacaatcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaat 8900738  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    ||| ||||||| | |||||| || |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| ||||||||||| |  ||       
T  8900739 gggcctggtaggtacaatctcaatgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttttaactcttg 8900838  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    | || ||||| || |  || |||||| ||||||||||||| ||||| ||||||||||||||||||||||||  |||||| | ||||||||| ||| ||||    
T  8900839 aattcctaatctcttgttgcactttcttcattactcttggattttttattaaggcagtcatagcccaaactattgtggcagatgtggtatccgttgcagc 8900938  T
Q  411 tacaa 415  Q
    |||||    
T  8900939 tacaa 8900943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 8914452 - 8914848
Alignment:
Q  19 attagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaa 118  Q
    |||||||||||||||||||||  |||||||| |||||||||||| ||||| || |||||||||||||||| ||||| |||||||||   |||| | ||||    
T  8914452 attagttcaaaatcttgtccatgaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaa 8914551  T
Q  119 tagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctgg 218  Q
    ||||||||||||||||| ||| ||| | ||| || ||||| | | | |||||||||||||| ||||||  || |||||| | |   ||||||||||||||    
T  8914552 tagcccaagcattcacaaacactatcgcctttgcgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggggctgg 8914651  T
Q  219 tagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttcta 318  Q
     || | |||||| || |||||||| ||||||||||| || || |  |||||| | |||||||||||||||| ||||||||||| |  ||   | || |||    
T  8914652 caggtacaatctcaatgtctcttttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttttaactcttgaattccta 8914751  T
Q  319 atttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagctacaa 415  Q
    || || |  ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |  |||||| ||||| | |||||||    
T  8914752 atctcttgttgtactttcttcattactcttggattttttattaaggcagtcatagcccaaactgctgtggcagacgtggtacctgttgccgctacaa 8914848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 8929374 - 8929770
Alignment:
Q  19 attagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaa 118  Q
    |||| ||||||||| ||||||  ||||||||||||||| ||||||||||| ||||||||||| ||||| |  | || |||||  | |  |||||| ||||    
T  8929374 attaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaa 8929473  T
Q  119 tagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctgg 218  Q
    ||| ||||||||||||||| | |||||| || || ||||||| ||| |||  || | |||| ||||| | || |||||| | ||  |||||||| |||||    
T  8929474 tagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctgg 8929573  T
Q  219 tagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatcta-aaaattctttttcacgtcccaagtttct 317  Q
    ||| | |||||| || |||||||| ||||| |||||||||||    |||||||| | ||||||| | |||| ||||| |||||| || ||   |    ||    
T  8929574 taggtacaatctcaatgtctcttttatcaccgccttcaaatagacgaaattttgtagatcatctccgtctagaaaatcctttttaac-tcttgatcccct 8929672  T
Q  318 aatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagctacaa 415  Q
    ||| || || ||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||   ||||| |  |||||||||||| | |||||||    
T  8929673 aatctcttcttgtactttcttcattactcttgggttttttattagggcagtcatagcccacactatcgtggcagacgtggtatctgttgcggctacaa 8929770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 20073998 - 20074402
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||| ||||||||||||||||||||   ||||||||| ||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||    
T  20073998 caaagggaattagttcaaaatcttgtccgtgaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtc 20074097  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    | | ||||||||||||||||||||| ||| ||  | ||| || ||||| | ||| |||  ||||||||| ||||| | || |||||| | ||  ||||||    
T  20074098 tgtatgaatagcccaagcattcacaaacactaccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaat 20074197  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    |||||||| |  | |||||| |  |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| ||||||||||| |  |        
T  20074198 ggggctggcaagtacaatctcagtgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttttaacttttg 20074297  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    | |||||||| || |  ||||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  20074298 aatttctaatctcttgttgtactttcttcattactcttggattttttattaatgcagtcatagcccatactgttgtggctgatgtggtatctgttgcagc 20074397  T
Q  411 tacaa 415  Q
     ||||    
T  20074398 aacaa 20074402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 9400236 - 9400640
Alignment:
Q  11 caaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtc 110  Q
    ||||||| || | |||||| |||||||||  ||||||||||||||||||||||||||| || |||||||| |||||||  | || ||||||||||  |||    
T  9400236 caaagggaataaattcaaagtcttgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtc 9400335  T
Q  111 tctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaat 210  Q
    ||| ||||||||||||||||||||||||| ||||||||| |||||||| | ||| |||  |||||||||  ||||   ||| || || | ||| ||||||    
T  9400336 tctatgaatagcccaagcattcacatacactattgtctttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaat 9400435  T
Q  211 ggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtccca 310  Q
    ||   ||||||    ||||| || |||||||| || ||||||||||| || |  |||||||| |||||||||||||||||||| ||||||| |  ||       
T  9400436 ggatttggtaggaataatctcaatgtctcttttatgactgccttcaagtaggagaaattttgtatatcatcttcatctaaaaagtcttttttaactcttg 9400535  T
Q  311 agtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctgttccagc 410  Q
    |  | ||||| || |  ||||||||| ||||||||   ||||| || |||| | ||||||| ||||||||| |||| |||| ||| ||||||||| ||||    
T  9400536 aactcctaatctcttgttgtactttcttcattactgcagggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctgttgcagc 9400635  T
Q  411 tacaa 415  Q
    |||||    
T  9400636 tacaa 9400640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 15689 - 15566
Alignment:
Q  268 ttttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcag 367  Q
    ||||||||||||||||||||||  || |||||||  |  |  | |||||||||||| || ||  ||||| ||||| ||||||| || ||||||||  |||    
T  15689 ttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccag 15590  T
Q  368 tcatagcccaaactgatgtggctg 391  Q
    |||| |||||||| ||||||||||    
T  15589 tcatcgcccaaaccgatgtggctg 15566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 3630396 - 3630519
Alignment:
Q  268 ttttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttcatcgtgtactttcctcattactcttgggtttttcattaaggcag 367  Q
    ||||||||||||||||||||||  || |||||||  |  |  | |||||||||||| || ||  ||||| ||||| ||||||| || ||||||||  |||    
T  3630396 ttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccag 3630495  T
Q  368 tcatagcccaaactgatgtggctg 391  Q
    |||| |||||||| ||||||||||    
T  3630496 tcatcgcccaaaccgatgtggctg 3630519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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