View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_21 (Length: 228)
Name: NF19711_low_21
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_21 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 26145089 - 26144866
Alignment:
| Q |
7 |
gaagtcactaattccttgacaaggaggtccaccgcatactacatcctcaactccttatatgtcaattgacaagaatagttaacaaatttgaaagaagnnn |
106 |
Q |
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| T |
26145089 |
gaagtcactaattccttgacaaggaggtccaccgcatactacatcctcaactccttatatgtcaattgacaagaatagttaacaaatttgaaagaagaaa |
26144990 |
T |
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| Q |
107 |
nnnnn--catgcttatctaaattatgcgtttatgataatagattgaaatttttacatttctaaatcaagtgaagaatttatgaagataaataataacttt |
204 |
Q |
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| T |
26144989 |
aaaaaaacatgcttatctaaattatgcatttatcataatagattgaaatttttacatttctaaatcaagtgaagaatttatgaagataaataataacttt |
26144890 |
T |
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| Q |
205 |
gaaatcttctgatatagcatatta |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
26144889 |
gaaatcttctgatatagcatatta |
26144866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 26145464 - 26145688
Alignment:
| Q |
7 |
gaagtcactaattccttgacaaggaggtccaccgcatactacatcctcaactccttatatgtcaattgacaagaatagttaacaaatttgaaagaagnnn |
106 |
Q |
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|||| |||||||| |||||||||||||||||| ||||||||||||| |||||| || ||| ||||||||||||||||| |||||||||||||||| |
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| T |
26145464 |
gaagccactaatttcttgacaaggaggtccacggcatactacatccgcaactcactacatgacaattgacaagaatagtcaacaaatttgaaagaaagaa |
26145563 |
T |
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| Q |
107 |
nnnnn---catgcttatctaaattatgcgtttatgataatagattgaaatttttacatttctaaatcaagtgaagaatttatgaagataaataataactt |
203 |
Q |
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| T |
26145564 |
aaaaaaagcatgcttatttaaattttgcagttatgataatatattgaaatcttcacatgtctaaatcaagtgacgagtttataaagttaaacaataactt |
26145663 |
T |
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| Q |
204 |
tgaaatcttctgatatagcatatta |
228 |
Q |
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|||||| |||||||||||||||||| |
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| T |
26145664 |
tgaaattttctgatatagcatatta |
26145688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 16235205 - 16235419
Alignment:
| Q |
7 |
gaagtcactaattccttgacaaggaggtccaccgcatactacatcctcaactccttatatgtcaattgacaagaatagttaacaaatttgaaagaagnnn |
106 |
Q |
| |
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|||| ||||||||||| ||||| || |||||||||||||||||| |||||| ||| || |||||||||||||||||| ||||||||||||| | |
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| T |
16235205 |
gaagccactaattcctcgacaatgaagtccaccgcatactacatatggaactccctatgtgacaattgacaagaatagtttacaaatttgaaaggaaaaa |
16235304 |
T |
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| Q |
107 |
nnnnncatgcttatctaaattatgcgtttatgataatagattgaaatttttacatttctaaatcaagtgaagaatttatgaagataaataataactttga |
206 |
Q |
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| T |
16235305 |
a-----acgcttatctaaattatgcagttttgataatatattgaaatcttcacatctctaaatcaagtgataagtttatgaagttaaataataactttga |
16235399 |
T |
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| Q |
207 |
aatcttctgatatagcatat |
226 |
Q |
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||| || ||||||||||||| |
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| T |
16235400 |
aattttgtgatatagcatat |
16235419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 16234797 - 16234575
Alignment:
| Q |
7 |
gaagtcactaattccttgacaaggaggtccaccgcatactacatcctcaactccttatatgtcaattgacaagaatagttaacaaatttgaaagaagnnn |
106 |
Q |
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|||| ||||||||||| ||||||||| || | | |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||| | |
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| T |
16234797 |
gaagccactaattcctcgacaaggagttcaattggatactacatctccaactccctacatgacaattgacaagaatagttaacaaatttgaaaggaacaa |
16234698 |
T |
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| Q |
107 |
nnnnncatgcttatctaaattat-gcgtttatgataa-tagattgaaatttttacatttctaaatcaagtgaagaatttatgaagataaataataacttt |
204 |
Q |
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|||||||||||||||||| | | | |||| || || ||||| || |||| ||||||| |||||| | ||||||||| ||||||||| |||| |
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| T |
16234697 |
aaaaccatgcttatctaaattataaggatgctaataattatatagaaatcttcacatctctaaataaagtgacaagtttatgaagttaaataatagcttt |
16234598 |
T |
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| Q |
205 |
gaaatcttctgatatagcatatta |
228 |
Q |
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||| | |||||||||||||||||| |
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| T |
16234597 |
gaagt-ttctgatatagcatatta |
16234575 |
T |
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