View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_22 (Length: 227)
Name: NF19711_low_22
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 38931946 - 38931745
Alignment:
| Q |
11 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38931946 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatctttcttacattcaaaacattatctacgagac |
38931847 |
T |
|
| Q |
111 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931846 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
38931747 |
T |
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| Q |
211 |
at |
212 |
Q |
| |
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|| |
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| T |
38931746 |
at |
38931745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 12151823 - 12151622
Alignment:
| Q |
11 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
110 |
Q |
| |
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|||||||||||||| | |||| ||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
12151823 |
aagcaaaggatgaattatacaccaaaataggcaatgatcgtttggtagatgagtcagacatttcaaatcttccatacattcaaaacattatctacgagac |
12151724 |
T |
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| Q |
111 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
210 |
Q |
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||| | || |||||||| ||||||||| |||| |||||||||||||| | || || ||||| ||||| | |||||||||||||||||| ||||||||| |
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| T |
12151723 |
actaagattatactctcctgctccattactattacctcgtttttcttcggatgaatgtaatatcgaaggttatactattccacgtgacactatagttttg |
12151624 |
T |
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| Q |
211 |
at |
212 |
Q |
| |
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|| |
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|
| T |
12151623 |
at |
12151622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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