View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19711_low_4 (Length: 473)

Name: NF19711_low_4
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19711_low_4
NF19711_low_4
[»] chr4 (8 HSPs)
chr4 (24-456)||(42040455-42040890)
chr4 (23-85)||(21283796-21283858)
chr4 (24-85)||(11661031-11661092)
chr4 (13-68)||(39466304-39466359)
chr4 (26-83)||(45864941-45864998)
chr4 (26-83)||(54185597-54185654)
chr4 (13-85)||(11660811-11660883)
chr4 (13-85)||(39834068-39834140)
[»] chr1 (5 HSPs)
chr1 (242-456)||(15776405-15776619)
chr1 (55-155)||(15776624-15776724)
chr1 (26-71)||(16313967-16314012)
chr1 (24-85)||(28485877-28485938)
chr1 (26-70)||(1181497-1181541)
[»] chr5 (9 HSPs)
chr5 (253-445)||(875363-875553)
chr5 (13-85)||(40018097-40018169)
chr5 (306-342)||(868082-868118)
chr5 (369-421)||(877129-877181)
chr5 (307-378)||(871952-872023)
chr5 (329-378)||(877066-877116)
chr5 (26-71)||(29195264-29195309)
chr5 (57-85)||(26654419-26654447)
chr5 (57-85)||(26926004-26926032)
[»] scaffold0001 (1 HSPs)
scaffold0001 (24-85)||(185439-185500)
[»] chr7 (3 HSPs)
chr7 (26-85)||(432919-432978)
chr7 (21-85)||(31877420-31877484)
chr7 (24-70)||(23943729-23943775)
[»] chr3 (3 HSPs)
chr3 (26-85)||(46183003-46183062)
chr3 (24-85)||(7789931-7789992)
chr3 (24-71)||(20513512-20513559)
[»] chr2 (2 HSPs)
chr2 (19-85)||(6401756-6401822)
chr2 (18-85)||(187246-187313)
[»] scaffold0012 (1 HSPs)
scaffold0012 (24-85)||(36252-36313)
[»] chr8 (3 HSPs)
chr8 (24-85)||(5015430-5015491)
chr8 (55-84)||(32077083-32077112)
chr8 (26-71)||(39047289-39047334)
[»] scaffold0010 (1 HSPs)
scaffold0010 (18-71)||(28596-28649)
[»] chr6 (3 HSPs)
chr6 (24-85)||(9929593-9929654)
chr6 (24-85)||(4410223-4410284)
chr6 (29-85)||(32879621-32879677)
[»] scaffold0015 (1 HSPs)
scaffold0015 (24-70)||(33592-33638)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 24 - 456
Target Start/End: Original strand, 42040455 - 42040890
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagtgtcgctgaaaaaccacgttctgaacaccagtgtgaatt 123  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  42040455 gttagttaactaacgcacgtgtaaaactatgtgttagttaactaacgtggcgtgacttaagtgtcgctgaaaaaccacgttctgaacaccagcgtgagtt 42040554  T
Q  124 atctgacgctggttttgttttcacatattcaacatggttttgcatttatcacattcaaaagttgtctcccaccgctttactttaatcaccccatgattat 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42040555 aactgacgctggttttgttttcacatattcaacatggttttgcatttattacatccaaaagttgtctcccaccgctttactttaatcaccccatgattat 42040654  T
Q  224 attaatttaaaactcatggcaatacttatccatggatgaaagatagatttaacaaacttaaaattttgtcattttttcatacgtgttgc---agccttgt 320  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  42040655 attaatttaaagctcatggcaatacttatccatggatgaaagatagatttaacaaacttaaaattttgtcattttttcatacgtgttgctgtagccttgt 42040754  T
Q  321 tttgttttagttttaatggttgagaagtgacacggattgggaatggtttggtttgttgggtatttaattgaatgagacagtcatgatgtatggatggttc 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42040755 tttgttttagttttaatggttgagaagtgacacggatcgggaatggtttggtttgttgggtattgaattgaatgagacagtcatgatgtatggatggttc 42040854  T
Q  421 tagtaaggcatttctatcatgttgatgcatcaaaag 456  Q
    ||| ||||||||||||||||||||||||||||||||    
T  42040855 tagcaaggcatttctatcatgttgatgcatcaaaag 42040890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 21283796 - 21283858
Alignment:
Q  23 tgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||| |||| ||||||||    
T  21283796 tgttagttaactaacgcaagtgtaaaactatgtgttagttaactaacgctgcgttacttaagt 21283858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 11661092 - 11661031
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||| ||||| || ||| ||||| ||||||||||| |||||||||||||    
T  11661092 gttagttaactaacgcaagtgtaaaattatgcgttacttaactaacgcagcgtgacttaagt 11661031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39466359 - 39466304
Alignment:
Q  13 aatatccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaa 68  Q
    |||||||||| ||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  39466359 aatatccatgcgttagttaactaacgcaagtgtaaatgtatgcgttagttaactaa 39466304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 45864998 - 45864941
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaa 83  Q
    ||||||||||| ||| ||||| |||||| |||||||||| |||||| |||||| ||||    
T  45864998 tagttaactaatgcaagtgtaaaactatgcgttagttaagtaacgctgcgtgagttaa 45864941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 54185654 - 54185597
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaa 83  Q
    ||||||||||||||| ||||| |||||| || ||||||| |||||| |||||| ||||    
T  54185654 tagttaactaacgcaagtgtaaaactatgcgctagttaagtaacgctgcgtgagttaa 54185597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 11660811 - 11660883
Alignment:
Q  13 aatatccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||| || ||||||||||||||||| ||||| || |||  |||| |||||||||||  | ||||||||||    
T  11660811 aatatccttgcgttagttaactaacgcaagtgtaaaattatgtgttacttaactaacgcaacatgacttaagt 11660883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 39834068 - 39834140
Alignment:
Q  13 aatatccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||| | ||||||||||||||||   ||||| || ||| ||||| ||||||||||| |||| ||||||||    
T  39834068 aatatccttatgttagttaactaacgttagtgtaaaattatgcgttacttaactaacgcagcgtaacttaagt 39834140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 242 - 456
Target Start/End: Complemental strand, 15776619 - 15776405
Alignment:
Q  242 gcaatacttatccatggatgaaagatagatttaacaaacttaaaattttgtcattttttcatacgtgttgcagccttgttttgttttagttttaatggtt 341  Q
    |||||||||||||||| || ||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  15776619 gcaatacttatccatgaataaaagatagattcaacaaactaaaaattttgtcattctttaatacgtgttgcagccttgttttgttttagttttaatggtt 15776520  T
Q  342 gagaagtgacacggattgggaatggtttggtttgttgggtatttaattgaatgagacagtcatgatgtatggatggttctagtaaggcatttctatcatg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15776519 gagaagtgacacggattgggaatggtttggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttctagcaaggcatttctatcatg 15776420  T
Q  442 ttgatgcatcaaaag 456  Q
    || ||||||||||||    
T  15776419 tttatgcatcaaaag 15776405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 15776724 - 15776624
Alignment:
Q  55 cgttagttaactaacgcggcgtgacttaagtgtcgctgaaaaaccacgttctgaacaccagtgtgaattatctgacgctggttttgttttcacatattca 154  Q
    |||||||||| ||||  ||||||||||||||| |||||||||| |||||||| |||||||| |||| ||| || | ||||  ||||||||||||||||||    
T  15776724 cgttagttaattaacatggcgtgacttaagtgacgctgaaaaatcacgttctaaacaccagcgtgagttaactcaggctgagtttgttttcacatattca 15776625  T
Q  155 a 155  Q
    |    
T  15776624 a 15776624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 16313967 - 16314012
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgc 71  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||    
T  16313967 tagttaactaacgcaagtgaaaaactatgcgttagttaactaacgc 16314012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 28485877 - 28485938
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||| ||| ||||| || ||| ||||| |||||||| || |||||||||||||    
T  28485877 gttagttaactaatgcaagtgtaaaattatgcgttacttaactaatgcagcgtgacttaagt 28485938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 1181541 - 1181497
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacg 70  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||    
T  1181541 tagttaactaacgcaagtgaaaaactatgcgttagttaactaacg 1181497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 253 - 445
Target Start/End: Original strand, 875363 - 875553
Alignment:
Q  253 ccatggatgaaagatagatttaacaaacttaaaattttgtcattttttcatac---gtgttgcagccttgttttgttttagttttaatggttgagaagtg 349  Q
    ||||| || ||||||||||| |||||||| ||| |||||||||| ||| ||||   ||||||||||||||||| |||||||||||||||||||||||  |    
T  875363 ccatgaataaaagatagattcaacaaactgaaatttttgtcattctttaatacaaagtgttgcagccttgtttagttttagttttaatggttgagaacgg 875462  T
Q  350 acacggattgggaatggtttggtttgttgggtatttaattgaatgagacagtcatgatgtatggatggttctagtaaggcatttctatcatgttga 445  Q
    |||| ||||||||||||||| |||| ||||||     |||||||||| |||| ||||||||||||||||||| | ||||| |||||||||||||||    
T  875463 acaccgattgggaatggtttcgttttttgggt-----attgaatgaggcagtgatgatgtatggatggttctggcaaggcgtttctatcatgttga 875553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 40018097 - 40018169
Alignment:
Q  13 aatatccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    |||| ||||| ||||||||||||||||| ||||| |||||| |||||||||||||| || |||| ||||||||    
T  40018097 aatacccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaatgctgcgttacttaagt 40018169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 868082 - 868118
Alignment:
Q  306 gtgttgcagccttgttttgttttagttttaatggttg 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  868082 gtgttgcaaccttgttttgttttagttttaatggttg 868118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 877129 - 877181
Alignment:
Q  369 tggtttgttgggtatttaattgaatgagacagtcatgatgtatggatggttct 421  Q
    |||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||    
T  877129 tggtgtgtcgggtattgaattgaatgagacagtgatgatggatggatggttct 877181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 871952 - 872023
Alignment:
Q  307 tgttgcagccttgttttgttttagttttaatggttgagaagtgacacggattgggaatggtttggtttgttg 378  Q
    ||||||| |||||||||| | || |||| ||||||| |||  ||||| |||||||||||||| |||||||||    
T  871952 tgttgcaaccttgttttgctataattttcatggttgcgaaccgacacagattgggaatggttcggtttgttg 872023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 877066 - 877116
Alignment:
Q  329 agttttaatggttgagaagtgacacggattggg-aatggtttggtttgttg 378  Q
    |||||||||||||||||| |||||| ||||||| ||||||| |||||||||    
T  877066 agttttaatggttgagaactgacacagattgggaaatggttcggtttgttg 877116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 29195264 - 29195309
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgc 71  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||    
T  29195264 tagttaactaacgcaagtgaaaaactatgcgttagttaactaacgc 29195309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 26654447 - 26654419
Alignment:
Q  57 ttagttaactaacgcggcgtgacttaagt 85  Q
    |||||||||||||||||||||||||||||    
T  26654447 ttagttaactaacgcggcgtgacttaagt 26654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 26926032 - 26926004
Alignment:
Q  57 ttagttaactaacgcggcgtgacttaagt 85  Q
    |||||||||||||||||||||||||||||    
T  26926032 ttagttaactaacgcggcgtgacttaagt 26926004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 185439 - 185500
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||| |||| ||||||||    
T  185439 gttagttaactaacgcaagtgtaaaactatgcgttagttaactaacgctgcgttacttaagt 185500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 432978 - 432919
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||| ||||| || ||| |||||||||||||||||| ||||||||||||    
T  432978 tagttaactaacgcaagtgtaaaattatgcgttagttaactaacgcgacgtgacttaagt 432919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 31877420 - 31877484
Alignment:
Q  21 tgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||| |||||||||||| ||||| || ||| |||||||||||||||||  | ||||||||||    
T  31877420 tgtgttaattaactaacgcaagtgtaaaattatgcgttagttaactaacgcaacatgacttaagt 31877484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 23943775 - 23943729
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacg 70  Q
    ||||||||||||||||| ||||| |||||| || |||||||||||||    
T  23943775 gttagttaactaacgcaggtgtaaaactatgcgctagttaactaacg 23943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 46183003 - 46183062
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||| ||||||| ||||| || ||| |||||||||||||||||||||||||||||||    
T  46183003 tagttaaataacgcaagtgtaaaattatgcgttagttaactaacgcggcgtgacttaagt 46183062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7789992 - 7789931
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||| ||||| || ||| ||||| ||||||||||| | |||||||||||    
T  7789992 gttagttaactaacgcaggtgtaaaattatgcgttacttaactaacgcagtgtgacttaagt 7789931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 20513512 - 20513559
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgc 71  Q
    ||||||||||||||||| ||||| |||||| || ||||||||||||||    
T  20513512 gttagttaactaacgcaagtgtaaaactatgcgatagttaactaacgc 20513559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 6401756 - 6401822
Alignment:
Q  19 catgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    |||||||||||||||||||||| || || || |||  |||||||||||||||| |||||||||||||    
T  6401756 catgtgttagttaactaacgcaagtataaaattatgtgttagttaactaacgcagcgtgacttaagt 6401822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 187313 - 187246
Alignment:
Q  18 ccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||| ||||||||||||||||| ||||| |||||| ||||||||||| |||||  ||| ||||||||    
T  187313 ccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaacaaacgctacgttacttaagt 187246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 36313 - 36252
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||| ||||| || ||| ||||| ||||||||||| |||||||||||||    
T  36313 gttagttaactaacgcaagtgtaaaattatgcgttacttaactaacgcagcgtgacttaagt 36252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 5015430 - 5015491
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||| |||| | ||||||    
T  5015430 gttagttaactaacgcacgtgtaaaactatgcgctagttaactaacgctgcgtcaattaagt 5015491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 32077112 - 32077083
Alignment:
Q  55 cgttagttaactaacgcggcgtgacttaag 84  Q
    ||||||||||||||||||||||||||||||    
T  32077112 cgttagttaactaacgcggcgtgacttaag 32077083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 39047334 - 39047289
Alignment:
Q  26 tagttaactaacgcacgtgtacaactattcgttagttaactaacgc 71  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||    
T  39047334 tagttaactaacgcaagtgaaaaactatgcgttagttaactaacgc 39047289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 28596 - 28649
Alignment:
Q  18 ccatgtgttagttaactaacgcacgtgtacaactattcgttagttaactaacgc 71  Q
    ||||| ||||||||||||||||| ||||| || ||| |||||||||||||||||    
T  28596 ccatgcgttagttaactaacgcaagtgtaaaattatgcgttagttaactaacgc 28649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 9929593 - 9929654
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||| ||||||| ||||| ||||||  |||||||||||||||| |||| ||||||||    
T  9929593 gttagttaattaacgcaagtgtaaaactatgtgttagttaactaacgctgcgttacttaagt 9929654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 4410284 - 4410223
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    ||||||||||||||||| ||||| ||||||   ||||||||||||||| | || ||||||||    
T  4410284 gttagttaactaacgcaagtgtaaaactatgtattagttaactaacgctgtgtcacttaagt 4410223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 32879621 - 32879677
Alignment:
Q  29 ttaactaacgcacgtgtacaactattcgttagttaactaacgcggcgtgacttaagt 85  Q
    |||||||||||| ||||| || |||  |||| ||||||||||| |||||||||||||    
T  32879621 ttaactaacgcaagtgtaaaattatgtgttacttaactaacgcagcgtgacttaagt 32879677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 33638 - 33592
Alignment:
Q  24 gttagttaactaacgcacgtgtacaactattcgttagttaactaacg 70  Q
    ||||||||||||||||| ||||| ||| || ||||||||||||||||    
T  33638 gttagttaactaacgcaagtgtaaaacaatgcgttagttaactaacg 33592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University