View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_5 (Length: 463)
Name: NF19711_low_5
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 47126248 - 47126685
Alignment:
| Q |
18 |
acacgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----ctt |
110 |
Q |
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| T |
47126248 |
acacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacacctt |
47126347 |
T |
|
| Q |
111 |
caatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggata |
210 |
Q |
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| T |
47126348 |
caatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggata |
47126447 |
T |
|
| Q |
211 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttct |
310 |
Q |
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| T |
47126448 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttct |
47126547 |
T |
|
| Q |
311 |
gttcttcaaacttgggtctttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
410 |
Q |
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| T |
47126548 |
gttcttcaaacttgggtccttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
47126647 |
T |
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| Q |
411 |
gcagtccaatcagggtctactgtctgcccaagataaac |
448 |
Q |
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| T |
47126648 |
gcagtccaatcagggtctactgtctgtccaagataaac |
47126685 |
T |
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