View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19711_low_7 (Length: 427)

Name: NF19711_low_7
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19711_low_7
NF19711_low_7
[»] chr2 (5 HSPs)
chr2 (209-416)||(28629894-28630101)
chr2 (35-197)||(21203351-21203508)
chr2 (289-364)||(28615620-28615695)
chr2 (146-198)||(21949748-21949800)
chr2 (104-148)||(45212918-45212962)
[»] chr4 (5 HSPs)
chr4 (24-198)||(41309957-41310131)
chr4 (35-181)||(34160855-34161001)
chr4 (103-198)||(2049168-2049265)
chr4 (103-198)||(12763217-12763314)
chr4 (137-194)||(10457425-10457482)
[»] chr1 (11 HSPs)
chr1 (24-198)||(13129194-13129368)
chr1 (24-198)||(34106295-34106469)
chr1 (25-198)||(52316130-52316303)
chr1 (24-192)||(3525958-3526125)
chr1 (33-197)||(43699440-43699604)
chr1 (24-198)||(27491889-27492063)
chr1 (24-126)||(11084646-11084748)
chr1 (77-197)||(41114626-41114744)
chr1 (83-198)||(45602845-45602957)
chr1 (154-198)||(11084773-11084817)
chr1 (33-75)||(41114555-41114597)
[»] chr8 (5 HSPs)
chr8 (24-198)||(15795852-15796027)
chr8 (24-198)||(40318404-40318577)
chr8 (33-197)||(2611739-2611903)
chr8 (104-198)||(40716101-40716197)
chr8 (143-198)||(10150704-10150759)
[»] chr6 (17 HSPs)
chr6 (24-193)||(8859242-8859411)
chr6 (36-197)||(5764362-5764527)
chr6 (36-197)||(5767897-5768062)
chr6 (36-197)||(5771432-5771597)
chr6 (36-197)||(5774967-5775132)
chr6 (36-197)||(5778502-5778667)
chr6 (36-197)||(5782037-5782202)
chr6 (36-197)||(5785572-5785737)
chr6 (36-197)||(5789107-5789272)
chr6 (36-197)||(5792642-5792807)
chr6 (36-197)||(5796177-5796342)
chr6 (36-197)||(5799712-5799877)
chr6 (36-197)||(5803247-5803412)
chr6 (36-197)||(5806782-5806947)
chr6 (36-197)||(5810317-5810482)
chr6 (36-197)||(5813852-5814017)
chr6 (36-197)||(5817387-5817552)
[»] chr3 (4 HSPs)
chr3 (24-198)||(34466622-34466793)
chr3 (72-194)||(51499657-51499782)
chr3 (104-190)||(3847675-3847763)
chr3 (107-198)||(11536388-11536481)
[»] chr7 (5 HSPs)
chr7 (27-198)||(34483929-34484100)
chr7 (33-197)||(37370482-37370646)
chr7 (103-168)||(38836323-38836390)
chr7 (105-186)||(39540534-39540617)
chr7 (24-169)||(49094359-49094508)
[»] chr5 (1 HSPs)
chr5 (104-197)||(36863586-36863681)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 209 - 416
Target Start/End: Original strand, 28629894 - 28630101
Alignment:
Q  209 ttggattacaagggtaattccaacctattacaatcaatgaaacatcaaattaaatctttttcatattgaacaaacatatcttctaatgatttttctcctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28629894 ttggattacaagggtaattccaacctattacaatcaatgaaacatcaaattaaatctttttcatattgaacaaacatatcttctaatgatttttctcctt 28629993  T
Q  309 gacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaaggaaacaaataccagagatgaaacaattagccaacaaacgtcaat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28629994 gacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaaggaaacaaataccagagatgaaacaattagccaacaaacttcaat 28630093  T
Q  409 ccgttcat 416  Q
    ||||||||    
T  28630094 ccgttcat 28630101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 21203351 - 21203508
Alignment:
Q  35 atgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttca 134  Q
    ||||||||| |||||||| |||||||||| |||||| |||| || |||||||||||| ||||||||||    |||||||||||||||||||||| ||||     
T  21203351 atgctatatatgattagaattctttagggacatgtgcagccataagctttcttggcaggctacacttt----tgttgctataggatagcctttgccttcc 21203446  T
Q  135 tttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
    |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  21203447 tttc-ctcttttgtaaataggttcaggccttaatcctgatttgcattttattttcattgcttt 21203508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 28615620 - 28615695
Alignment:
Q  289 ttctaatgatttttctccttgacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaag 364  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  28615620 ttctaatgatttttctatatgacatgcaggaaatttggacattgtgtagaattttcaaaagaaatgtatcaaaaag 28615695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 21949800 - 21949748
Alignment:
Q  146 tgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  21949800 tgtaaacaggttcaggccttaatcctggttttcattttattttgattgctttg 21949748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 45212918 - 45212962
Alignment:
Q  104 ttttgttgctataggatagcctttggcttcatttctctcttttgt 148  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||    
T  45212918 ttttgttgctataggatatcatttggcttcctttctctcttttgt 45212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 41309957 - 41310131
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  41309957 ttgcataacagatgctatatctgattagaattctttaggggcatgtgcagccctatgctttcttggcaggctacactttgttttgttgctatagggtagc 41310056  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  41310057 ctttggcgtcctttctctcttttgtaaacaggttcaagccttaatcctggtttgcattttattttcattgctttg 41310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 181
Target Start/End: Complemental strand, 34161001 - 34160855
Alignment:
Q  35 atgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttca 134  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||     
T  34161001 atgctttatctgattagatttctttaggggcatgtgcaaccctatgctttcttggcaagttacactttgttttgttgctataggatagcttttggcttcc 34160902  T
Q  135 tttctctcttttgtaaacaggttcaggccttaatcgtggtttgcatt 181  Q
    ||||||||||||||||||| | ||||||||||||  || ||||||||    
T  34160901 tttctctcttttgtaaacatgctcaggccttaataatgatttgcatt 34160855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 2049168 - 2049265
Alignment:
Q  103 gttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||| || ||||| || ||||||||||||||||    
T  2049168 gttttgttgctataggatagcctttggcttcctttctctcttttgtgcaaataggttcaggccttaatcctgatttgctttatattttcattgctttg 2049265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 12763314 - 12763217
Alignment:
Q  103 gttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||| || ||||| || ||||||||||||||||    
T  12763314 gttttgttgctataggatagcttttggcttcctttctctcttttgtgtaaacaggttcaggccttaatcctgatttgctttatattttcattgctttg 12763217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 10457482 - 10457425
Alignment:
Q  137 tctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgc 194  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||    
T  10457482 tctctcttgtgtaaacaggttcaggccttaatcctgatttgcattttattctcattgc 10457425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 13129194 - 13129368
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  13129194 ttgcataacagatgctatatctgattagaattctttaggggcatgtgcagccctatgctttcttggcaggctacactttgttttgttgctatagggtagc 13129293  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13129294 ctttggcttcctttcttacttttgtaaacaggttcaggccttaatcctggtttgcattttattttcattgctttg 13129368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 34106469 - 34106295
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||||| | |||||||||||||||||| | || ||||| ||||||||||||||| ||||    
T  34106469 ttgcataacagatgttatatctgattagaattctttaagggcatgtgcaaccctatgctttcttggcaggttatactttattttgttgctatagggtagc 34106370  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34106369 ctttggcttcctttctctcttttgtaaacaggttcaggccttaatcatggtttgcattttattttcattgctttg 34106295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 52316130 - 52316303
Alignment:
Q  25 tgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcc 124  Q
    ||||||| | ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  52316130 tgcataacaaatgctttatctgattatatttctttaggggcatgtgcagccctatgctttcttggcaagttacactttgttttgttgctataggatagcc 52316229  T
Q  125 tttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||    
T  52316230 tttggtttcgtttctctcttttgtaaacaggttcatgccttaatcctgatttgcatgttattttcattgctttg 52316303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 3525958 - 3526125
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||| |    
T  3525958 ttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgctttcttggcaggttacactttgttttgttgctataggataac 3526057  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcatt 192  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  3526058 c-ttggcttcctttctctcttttgtaaacaggttcaggccttaatcctgatttgcattttattttcatt 3526125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 43699440 - 43699604
Alignment:
Q  33 agatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggctt 132  Q
    ||||||||||||| |||||| |||||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  43699440 agatgctatatcttattagaattctttagggacatgtgcagccatatgctttcttggcaagctacacttagttttgttgctataggatagcctttggctt 43699539  T
Q  133 catttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
    | |||  |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  43699540 ccttttcctcttttgtaaacaggttcaggccttaatcctcgtttgcattctattttcattgcttt 43699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 27491889 - 27492063
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| |||||||||||||||||||| |||||||  | |||||| |||||||||||||||| | | ||||||||||| |||||||||||||||||||    
T  27491889 ttgcataacagatgctatatctgattagacttctttaaagacatgtgcagccctatgctttcttagtaggctacactttgctttgttgctataggatagc 27491988  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||| ||||||||||||||||| || |||| ||||||||| ||||||| ||||||||||||||||||||    
T  27491989 ctttggcttcctttctctcttttgtaaatagattcaagccttaatcatggtttgaattttattttcattgctttg 27492063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 11084646 - 11084748
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  11084646 ttgcataacagatgctatatctgattagaattctttaggggcatgtgcagtcctatgctttcttggcaggctacactttgttttgttgctatagggtagc 11084745  T
Q  124 ctt 126  Q
    |||    
T  11084746 ctt 11084748  T

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Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 41114626 - 41114744
Alignment:
Q  77 tatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggttt 176  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||| ||| ||||||    
T  41114626 tatgctttcttggcaggctacacttagttttgttgctataggatagcctttggcttc-cttccctcttttgtaaacaggttcagacctt-atcctggttt 41114723  T
Q  177 gcattttattttcattgcttt 197  Q
    ||||| |||||| ||||||||    
T  41114724 gcattctattttgattgcttt 41114744  T

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Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 45602957 - 45602845
Alignment:
Q  83 ttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattt 182  Q
    ||||||||| | ||||||||||||| ||| ||||||||| ||||||   || ||||||||||||||||||||||| |||| |||||| || |||||||||    
T  45602957 ttcttggcaagttacactttgttttattgatataggatatcctttg---tcctttctctcttttgtaaacaggttgaggctttaatcctgatttgcattt 45602861  T
Q  183 tattttcattgctttg 198  Q
    ||||||||||||||||    
T  45602860 tattttcattgctttg 45602845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 11084773 - 11084817
Alignment:
Q  154 ggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  11084773 ggttcaggccttaatcctggtttgcattttattttcattgctttg 11084817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 41114555 - 41114597
Alignment:
Q  33 agatgctatatctgattagatttctttaggggcatgtggagcc 75  Q
    |||||||||||||||||||| |||||||||| |||||| ||||    
T  41114555 agatgctatatctgattagaattctttagggacatgtgcagcc 41114597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 15796027 - 15795852
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
T  15796027 ttgcataatagatgttatatctgattagatttctttaggggcatgtgcagccctatgctttc-tggcaggctacactttgttttgttgctataggaaagc 15795929  T
Q  124 ctttggcttcatttctctcttt--tgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||| ||||||||||||||||  ||||||||  ||||| |||||||| ||||||||||||||||||||||||||||    
T  15795928 ctttgacttcatttctctcttttgtgtaaacaaattcagaccttaatcatggtttgcattttattttcattgctttg 15795852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 40318577 - 40318404
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| ||||||||||||||||| || ||||||| || |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40318577 ttgcataagagatgctatatctgatttgaattctttaagg-catgtgcaaccctatgctttcttggcaggctacactttgttttgttgctataggatagc 40318479  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  40318478 ctttggcttcctttctctcttttgtaaataggttcaggctttaatcctggtttgaattttattttcattgctttg 40318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 2611903 - 2611739
Alignment:
Q  33 agatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggctt 132  Q
    |||||||||||||||||||| ||||||| || ||| || |||| |||| |||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  2611903 agatgctatatctgattagaattctttaaggacatatgcagccatatgttttcttggcaggctactcttagttttgttgctttaggatagcctttggctt 2611804  T
Q  133 catttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
    | |||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  2611803 cctttccctcttttgtaaataggttcaggccttaatcctggtttgcattctattttcattgcttt 2611739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 40716101 - 40716197
Alignment:
Q  104 ttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||||| ||| |||||| |||||  |||| ||||||||||||||  ||| ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  40716101 ttttgttactacaggataacctttaccttcctttctctcttttgtgtaaataggttcatgccttaatcctggtttgcattttattttcattgctttg 40716197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 10150704 - 10150759
Alignment:
Q  143 ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    ||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  10150704 ttttgtaaacaggttcaagccttaatcctagtttgcaatttattttcattgctttg 10150759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 8859242 - 8859411
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  8859242 ttgcataacagatgctatatcttattagatttcattaggggcatgtgcagccctatgctttcttggtaggctacactttgttttgtttctataggatagc 8859341  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattg 193  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||    
T  8859342 ctttggcttcctttctctcttttgtaaacagattcaggccttaatcctaatttgcattttattttcattg 8859411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5764527 - 5764362
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5764527 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5764428  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5764427 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5768062 - 5767897
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5768062 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5767963  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5767962 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5767897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5771597 - 5771432
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5771597 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5771498  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5771497 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5771432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5775132 - 5774967
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5775132 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5775033  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5775032 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5774967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5778667 - 5778502
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5778667 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5778568  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5778567 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5778502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5782202 - 5782037
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5782202 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5782103  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5782102 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5782037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5785737 - 5785572
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5785737 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5785638  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5785637 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5789272 - 5789107
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5789272 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5789173  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5789172 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5789107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5792807 - 5792642
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5792807 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5792708  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5792707 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5796342 - 5796177
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5796342 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5796243  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5796242 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5796177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5799877 - 5799712
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5799877 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5799778  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5799777 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5803412 - 5803247
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5803412 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5803313  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5803312 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5803247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5806947 - 5806782
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5806947 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5806848  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5806847 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5806782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5810482 - 5810317
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5810482 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5810383  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5810382 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5810317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5814017 - 5813852
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5814017 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5813918  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5813917 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5813852  T

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Target: chr6; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 5817552 - 5817387
Alignment:
Q  36 tgctatatctgattagatttctttaggggcatgtggagccctatgctttct-tggcatgctacactttgtttt-gttgctataggatagcctttggcttc 133  Q
    |||||| |||||||||| ||||||||||  || || |||||| || ||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  5817552 tgctatgtctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttc 5817453  T
Q  134 atttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
     ||||||||  || ||||||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  5817452 ctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcattttattttcattgcttt 5817387  T

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Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 34466793 - 34466622
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagc 123  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||| |||||||||| | ||| ||||||||||   |||||| |||||||||||    
T  34466793 ttgcataacagatgctatatctaattagatttctttaggggcatgtgcagctctatgctttcatagcaggctacacttt---ttgttgttataggatagc 34466697  T
Q  124 ctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  34466696 ctttggcttcctttctctcttttgtaaacaggttcatgctttaatcctggtttgcattttattttcattgctttg 34466622  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 51499782 - 51499657
Alignment:
Q  72 agccctatgctttcttggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaat 168  Q
    |||||| ||||||  ||||| ||| | ||||||||| |||| || ||||||||||| |||||| ||||| ||||||||  |||||| |||||||||||||    
T  51499782 agccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacagattcaggccttaat 51499683  T
Q  169 cgtggtttgcattttattttcattgc 194  Q
    | ||||||||||||||||||||||||    
T  51499682 cctggtttgcattttattttcattgc 51499657  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 3847763 - 3847675
Alignment:
Q  104 ttttgttgctataggatagcctttggcttcatttc--tctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttca 190  Q
    ||||||||||||||||||||||| | |||| ||||  ||| ||||||||||||| ||||||||||||| | ||||||| ||||||||||    
T  3847763 ttttgttgctataggatagccttagacttcctttccttcttttttgtaaacagggtcaggccttaatcctagtttgcaatttattttca 3847675  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 11536388 - 11536481
Alignment:
Q  107 tgttgctataggatagcctttggcttcatttctctct--tttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
    |||||||| |||| ||||||  ||||| ||||| |||  | |||||||||||||||||||||||| ||||||| | |||||||| |||||||||    
T  11536388 tgttgctaaaggaaagccttatgcttcctttctttctaatgtgtaaacaggttcaggccttaatcatggtttgtaatttatttttattgctttg 11536481  T

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Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 34483929 - 34484100
Alignment:
Q  27 cataatagatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctt 126  Q
    ||||||||||||| ||||||||||||||| ||| | | |||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  34483929 cataatagatgctttatctgattagattttttttgagacatgtgcagccttatgcttccttggcatgttacactttgttttgttgctataggatagcctt 34484028  T
Q  127 tggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 198  Q
     |||||| ||||||||||||||||| |||||||| |||||||  |||||||||||||||||| |||| ||||    
T  34484029 aggcttcctttctctcttttgtaaataggttcagaccttaattctggtttgcattttatttttattgttttg 34484100  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 37370482 - 37370646
Alignment:
Q  33 agatgctatatctgattagatttctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggctt 132  Q
    ||||||||||||||||||||||||| ||||| ||| || |||| ||| |||| |||||| ||||||||| ||||||||| |||||||||| |||| ||||    
T  37370482 agatgctatatctgattagatttctgtagggacatttgaagccatattctttattggcaggctacacttagttttgttgttataggatagtctttagctt 37370581  T
Q  133 catttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
    | |||| |||||||||||| ||| |||||  |||||  || ||||||||||||||||||||||||    
T  37370582 cctttcactcttttgtaaataggctcaggtattaatactgatttgcattttattttcattgcttt 37370646  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 38836323 - 38836390
Alignment:
Q  103 gttttgttgctataggatagcctttggcttcatttctctcttt--tgtaaacaggttcaggccttaat 168  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  38836323 gttttgttgctataggatagcctttggcttcctttctctcttttgtgtaaacaggttcagaccttaat 38836390  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 39540534 - 39540617
Alignment:
Q  105 tttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttatt 186  Q
    |||||||||||||||||||||| |||||| ||| | ||||||||  ||| ||||||||||||||||| ||||||||| ||||||    
T  39540534 tttgttgctataggatagccttaggcttcctttatttcttttgtgtaaaaaggttcaggccttaatcctggtttgcaatttatt 39540617  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 49094508 - 49094359
Alignment:
Q  24 ttgcataatagatgctatatctgattagatttctttaggggcatgtggagccctatgcttt-cttggcatgctacactttgtttt-gttgctataggata 121  Q
    ||||||||||| |||||| || || |||| ||||||||||| | ||| |||| | |||||| | || || | ||| ||||||||| ||||||||||||||    
T  49094508 ttgcataatagttgctatgtcagagtagaattctttaggggtacgtgcagccatttgcttttcatgccaggatactctttgtttttgttgctataggata 49094409  T
Q  122 gcctttggcttcatttctctcttttg--taaacaggttcaggccttaatc 169  Q
     ||||||| ||| |||||||||||||  |||||| ||||| |||||||||    
T  49094408 acctttggtttcttttctctcttttgtataaacaagttcaagccttaatc 49094359  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 36863681 - 36863586
Alignment:
Q  104 ttttgttgctataggatagcctttggcttcatttctctcttt--tgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 197  Q
    ||||||||||||||||||| |||||||||| |||||||||||  || ||||| ||||||||||||||  ||||||||||||||||| |||||||||    
T  36863681 ttttgttgctataggatagtctttggcttcctttctctcttttatgcaaacatgttcaggccttaattttggtttgcattttatttccattgcttt 36863586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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