View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19711_low_9 (Length: 367)
Name: NF19711_low_9
Description: NF19711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19711_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 38 - 352
Target Start/End: Original strand, 51364838 - 51365152
Alignment:
| Q |
38 |
aacatccaaaaataaattacaaagggaacacgccacttcaatccaccttgtcattccacaaattagaaggacatgaaactaaacatgcaaaatggaaaaa |
137 |
Q |
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| T |
51364838 |
aacatccaaaaataaattacaaagagaacacaccacttcaatccaccttgtcattccacaaattagaaggacatgaaactaaacatgcaaaatggaaaaa |
51364937 |
T |
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| Q |
138 |
caagtatgaacaacggtcacacaccacttcaaggttacaagagagagaacaccatggaatatcaaaatgaaatatgcaaccaaataagtagaacacatga |
237 |
Q |
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| T |
51364938 |
caagtatgaacaacggtcacacaccacttcaagattacaagagagagaacaccatggaatatcaaaatgaaatatgcaaccaaataagtagaacacatga |
51365037 |
T |
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| Q |
238 |
accaagatatacaaaaatcaaataaagccaaaagaaactttatgaacaaccaacaagtcaaaccgaaaacggatatacctgagacaaacataagagtttg |
337 |
Q |
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| T |
51365038 |
accaagatatacaaaaatcaaataaagccaaaagaaactttatgaacaaccaacaagtcaaaccgaaaacggatatacctgagacaaacataagagtttg |
51365137 |
T |
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| Q |
338 |
atttacgagcctatg |
352 |
Q |
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|||||| |||||||| |
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| T |
51365138 |
atttacaagcctatg |
51365152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 53870251 - 53870213
Alignment:
| Q |
78 |
atccaccttgtcattccacaaattagaaggacatgaaac |
116 |
Q |
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| T |
53870251 |
atccaccttgtcactccacaaattagaagggcatgaaac |
53870213 |
T |
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