View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19712_high_1 (Length: 812)
Name: NF19712_high_1
Description: NF19712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19712_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 18 - 804
Target Start/End: Original strand, 40767361 - 40768147
Alignment:
| Q |
18 |
aaaacgctaagctctactcgctaaaggaaattgatattaaccctgatttgtcctcccaaattacttattctgataagcatagaagcatgtatatgacaga |
117 |
Q |
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| T |
40767361 |
aaaacgctaagctctactcgctaaaggaaattgatattaaccctgatttgtcctcccaaattacttattctgataagcatagaagcatgtatatgacaga |
40767460 |
T |
|
| Q |
118 |
tgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatctagttccaacgtctctacaagtttcatgcca |
217 |
Q |
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| T |
40767461 |
tgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatctagttccaacgtctctacaagtttcatgcca |
40767560 |
T |
|
| Q |
218 |
aaaaggcaacgtggtgctgaccagtccagttttggatcagatttgataatggaaaatcgaagcatggattcaattgaagttgatggtgtaatgagatcaa |
317 |
Q |
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| T |
40767561 |
acaaggcaacgtggtgctgatcagtccagttttggatcagatttgataatggaaaatcgaagcatggattcaattgaagttgatggtgtaatgagatcaa |
40767660 |
T |
|
| Q |
318 |
aactagaagcattggagagggcattacttgatgatagtgacattgaggaagaagaggaatatggtaattctcaaaccatggaaattgatcctaacattat |
417 |
Q |
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| T |
40767661 |
aactagaagcattggagagggcattgcttgatgatagtgacattgaggaagaagaggaatatggtaattctcaaaccatggaaattgatcctaacattat |
40767760 |
T |
|
| Q |
418 |
tgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcaccaaaggagtattcgtctccagattccaatattagcagcatc |
517 |
Q |
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| T |
40767761 |
tgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcaccaaaggagtattcgtctccagattccaatattagcagcatc |
40767860 |
T |
|
| Q |
518 |
agtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaatgtgctactgcaatttcagaaggaaatgaagaggaagcat |
617 |
Q |
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| T |
40767861 |
agtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaatgtgctactgcaatttcagaaggaaatgaagaggaagcat |
40767960 |
T |
|
| Q |
618 |
cgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatggtggagggactcgccgctcgcctcgc |
717 |
Q |
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| T |
40767961 |
cgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatggtggagggactcgccgctcgcctcgc |
40768060 |
T |
|
| Q |
718 |
tgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcagaccgtctagcagcgatgcagatattcttcga |
804 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
40768061 |
tgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcggaccgtctagcagcgatgcagatattgttcga |
40768147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 495 - 796
Target Start/End: Complemental strand, 10093940 - 10093639
Alignment:
| Q |
495 |
cagattccaatattagcagcatcagtagcaccaccaaagaaata--acaaaaatttc-taggacccccaagcaacttctttatgaatgtgctactgcaat |
591 |
Q |
| |
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||||||| ||| |||| |||| ||||||||||| |||||||| |||||| |||| | ||||||| |||||| | || ||||||||||||| ||| | |
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| T |
10093940 |
cagattcaaatcttagtagcaccagtagcacca---aagaaatatcacaaaactttcctcggaccccgaagcaattactatatgaatgtgctagcgcact |
10093844 |
T |
|
| Q |
592 |
ttcagaaggaaatgaagaggaagcatcgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatg |
691 |
Q |
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||||||||||||||||| |||| || | ||||| | ||||| | | | || |||||||| ||||| ||||| | |||||||||||||| ||| |
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| T |
10093843 |
ttcagaaggaaatgaagtaaaagcctcagctatgatcgatgatctcaggcagttggtttcaattcagggagaaccttcggatagaattgcagcctacatg |
10093744 |
T |
|
| Q |
692 |
gtggagggactcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcagaccgtctagcagcgatgc |
791 |
Q |
| |
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||||| ||||| || ||||| | ||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| |||| |
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| T |
10093743 |
gtggaaggacttgctgctcgtttggcttcatcgggaaaatgtatttataaagctttgaaatgcaaggaacctccgtcttctgatcgtctagcagcaatgc |
10093644 |
T |
|
| Q |
792 |
agata |
796 |
Q |
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||||| |
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| T |
10093643 |
agata |
10093639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 10094429 - 10094324
Alignment:
| Q |
87 |
ctgataagcatagaagcatgtatatgacagatgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatc |
186 |
Q |
| |
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|||||||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||||||||||| || |
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| T |
10094429 |
ctgataagcatagaagcatgtacatgaatgattcttactcgagtgagagttacgaaaagtacttccttgattcacctacagaggaactgatagaaccgtc |
10094330 |
T |
|
| Q |
187 |
tagttc |
192 |
Q |
| |
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|||||| |
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|
| T |
10094329 |
tagttc |
10094324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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