View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19712_high_3 (Length: 240)
Name: NF19712_high_3
Description: NF19712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19712_high_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 50253936 - 50253697
Alignment:
| Q |
1 |
tccatggacctccgagacaatcagtctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatg |
100 |
Q |
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| T |
50253936 |
tccatggacctccgagacaatcaggctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatg |
50253837 |
T |
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| Q |
101 |
cgccatatatcacagtcactgtaaattaatggaacctttgatggcagtgtattgactggtgactagtgatgttacactacaattaattatatctagaaaa |
200 |
Q |
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| T |
50253836 |
cgccatatatcacagtcactgtaaattaatggaacctttgatggcagtgtattgactggtgactagtgatgttacactacaattaattatatctagaaaa |
50253737 |
T |
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| Q |
201 |
cggagcatgtgaatggatattatactaatggataagcttt |
240 |
Q |
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| T |
50253736 |
cggagcatgtgaatggatattatactaatggataagcttt |
50253697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 50246799 - 50246694
Alignment:
| Q |
1 |
tccatggacctccgagacaatcagtctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||| ||||| || ||||||||||| ||||||||||| |
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| T |
50246799 |
tccatggacctccgagacaatcaggctgcttcaaggcttcggctaagcttagtccaaccattcccgtaactccgacaactagtgctaccggactttgatg |
50246700 |
T |
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| Q |
101 |
cgccat |
106 |
Q |
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| T |
50246699 |
ctccat |
50246694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27644092 - 27644181
Alignment:
| Q |
1 |
tccatggacctccgagacaatcagtctgcttcaaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgg |
90 |
Q |
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||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
27644092 |
tccatgggcctccaagacaatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacgg |
27644181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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