View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19712_low_2 (Length: 409)
Name: NF19712_low_2
Description: NF19712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19712_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 13974625 - 13975014
Alignment:
| Q |
11 |
agaatatagttgtcttttatcttggatgggatgataaactacaaaacttttgcaatccaagattcaaagtggttgtataagatatgttaaagtttttcta |
110 |
Q |
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| T |
13974625 |
agaatatagttgtcttttatcttggatgggatgataaactacaaaacttttgcaatccaagattcaaagtggttgtataagatatgttaaagtttttcta |
13974724 |
T |
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| Q |
111 |
attcacaagtggcaaggcataagggaaacacgtgaggtagcatttatctgcaaaaggcagagattctgnnnnnnnnnnnnnattattac-----acaaac |
205 |
Q |
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| T |
13974725 |
attcacaagtggcaaggcataagggaaacacgtgaggtagcatttttctgcaaaaggcagagattctgtttttttttttttttttttttttattacaaac |
13974824 |
T |
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| Q |
206 |
taatgcatatgaaattgttatggcttatgttactgtccactttcagtaacaaagcttttaatccgtttttgtttgtagaagaaagcactctcatgagaat |
305 |
Q |
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| T |
13974825 |
tactgcatatgaaattgttatggcttatgtttctgtccactttcagtaacaaagcttttaatccgtttttgtttgtagaagaaagcactctcatgagaat |
13974924 |
T |
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| Q |
306 |
ggatctacaagatcaggcaaattattaatactataaagcctagcttggaccaccattttaattctcatgccagacaaatccaaatatgtg |
395 |
Q |
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| T |
13974925 |
ggatctacaagatcaagcaaattattaatactataaagcctagcttggaccaccattttaattctcatgctagacaaatccaaatatgtg |
13975014 |
T |
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