View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19712_low_3 (Length: 403)
Name: NF19712_low_3
Description: NF19712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19712_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 46553843 - 46553520
Alignment:
| Q |
15 |
agatttgtctgctacaatactctttgttggccaagttctcaatcctcttctgaagtgatattaattacccatacaaacaaacatccaatggatgtgtgga |
114 |
Q |
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| T |
46553843 |
agatttgtctggtacaatactctttgttggccaagttctcaatcctcttctgaagtgatattaattacccatacaaaca----tcaaatggatgtgtgga |
46553748 |
T |
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| Q |
115 |
tcaaatggatttagtttgtcgtatttgcttttctgcttttgagactaatatatgatgataagatttaagattattgattatagttttgaattttgatttt |
214 |
Q |
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| T |
46553747 |
tcaaatggattgagtttgtcgtatttgcttttctgcttttgagactaatatatgatgataagatttaagattattgattatagttttgaattttgatttt |
46553648 |
T |
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| Q |
215 |
gaatgggttgctgcctcatgttttgattcttcatccttgacactatactactagtgaaagttaactctaatattgaatcatattatctttgcaatttgca |
314 |
Q |
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| T |
46553647 |
gaatgg-ttgctgcctcatgttttgattcttcatccttgacactatactactagtgaaagttaactctaatattgaatcatattatctttgcaatttgca |
46553549 |
T |
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| Q |
315 |
actactggatttagtgtaaactgtcaaga |
343 |
Q |
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| T |
46553548 |
actactggatttagtgtaaactgtcaaga |
46553520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 46532386 - 46532433
Alignment:
| Q |
16 |
gatttgtctgctacaatactctttgttggccaagttctcaatcctctt |
63 |
Q |
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| T |
46532386 |
gatttgtctggtacaatactctttgttggccaagtgctcaatcctctt |
46532433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 46539589 - 46539645
Alignment:
| Q |
261 |
actactagtgaaagttaactctaatattgaatcatattatctttgcaatttgcaact |
317 |
Q |
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| T |
46539589 |
actactagtgaaagttaactctaatatggaataatgttatcattgtaatttgcaact |
46539645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 46544956 - 46545014
Alignment:
| Q |
15 |
agatttgtctgctacaatactctttgttggccaagttctcaatcctcttctgaagtgat |
73 |
Q |
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| T |
46544956 |
agatttgtctggaacggtactctttattggacaagttctcaatcctcttctgaagtgat |
46545014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 26465931 - 26465855
Alignment:
| Q |
265 |
ctagtgaaagttaactctaatattgaatcatattatctttgcaatttgcaactactggatttagtgtaaactgtcaa |
341 |
Q |
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|||||||||||||||||||||| | | |||| ||||| ||||||||||||| | ||| || |||||| ||||||||| |
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| T |
26465931 |
ctagtgaaagttaactctaatactcagtcatgttatcattgcaatttgcaaatgctgcatatagtgtcaactgtcaa |
26465855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 29629239 - 29629288
Alignment:
| Q |
266 |
tagtgaaagttaactctaatattgaatcatattatctttgcaatttgcaa |
315 |
Q |
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| T |
29629239 |
tagtgaaagctaactctattattgaatcatgttatcattgcaaattgcaa |
29629288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 14607619 - 14607587
Alignment:
| Q |
285 |
tattgaatcatattatctttgcaatttgcaact |
317 |
Q |
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| T |
14607619 |
tattgaatcatattatcattgcaatttgcaact |
14607587 |
T |
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