View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_high_16 (Length: 278)
Name: NF19713_high_16
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 8820290 - 8820029
Alignment:
| Q |
1 |
acgcagttcttcaatgtgtttaacttgattgcagttacagtagctgtttatctcttggcatttgatatctctggacctcataaacatgttatttcattgg |
100 |
Q |
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| T |
8820290 |
acgcagttcttcaatgtgtttaacttgattgcagttacagtagctgtttatctcttggcatttgatatctctggacctcataaacatgttatttcattgg |
8820191 |
T |
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| Q |
101 |
ttttcacagtaggacttttgatcctattagctatgccacttcttgttcctttatatttggtcgtattcaaaactaggcctagtgttgacaaagaaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820190 |
ttttcacagtaggacttttgatcctattagctatgccacttcttgttcctttatatttggtcgtattcaaaactaggcctagtgttgacaaagaaaaaga |
8820091 |
T |
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| Q |
201 |
ggttcatgaacctttgttggcacaaaaggtttcagaagaaaaggaagagacacacaccaagg |
262 |
Q |
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| T |
8820090 |
ggttcatgaacctttgttggcacaaaaggtttcagaagaaaaggaagagacacgcaccaagg |
8820029 |
T |
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