View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_high_19 (Length: 253)
Name: NF19713_high_19
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42119854 - 42119604
Alignment:
| Q |
1 |
tttttatttttaattaagaacctctatttactttaaagtgttcacattcatcatataagattggannnnnnnnnnnnggaatgtaagactcaagtttttt |
100 |
Q |
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| T |
42119854 |
tttttttttttaattaagaacctctatttactttaaagtgttcacattcatcatataagattggatttttattttttggaatgtaagactcaagtttttt |
42119755 |
T |
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| Q |
101 |
atacaatcataagattgaaattgcaaacagatggata-------tacacacatcattattattgaatttgattgagaatgcttgcgtaaaaaagaggttt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42119754 |
atacaatcataagattgaaattgcaaacagatggatacacacactacacacatcattattattgaatttgattgagaatgcttgcgtaaaatagaggttt |
42119655 |
T |
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| Q |
194 |
gaggatatacatacac--aattgtttttcatggtaaaataaacacaatatt |
242 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42119654 |
gaggatatacatacacataattgtttttcatggtaaaataaacacaatatt |
42119604 |
T |
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