View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_high_2 (Length: 488)
Name: NF19713_high_2
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 23 - 480
Target Start/End: Original strand, 42925740 - 42926200
Alignment:
| Q |
23 |
acctcctcacctagtcatacaaccaaacaaaagctattacaccgtttgttaaaattaattaatgttgtaattaatgtaaagagctcatttgatttgatca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925740 |
acctcctcacctagtcatacaaccaaacaaaagctattacaccgtttgttaaaattaattaatgttgtaattaatgtaaagagctcatttgatttgatca |
42925839 |
T |
|
| Q |
123 |
ctgatctactataatttatcaaacaattttttcttgatttgaccgctggtcccaataaatttcacatgtttagttgttttgtttactacaactagtatta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925840 |
ctgatctactataatttatcaaacaattttttcttgatttgaccgctggtcccaataaatttcacatgtttagttgttttgtttactacaactagtatta |
42925939 |
T |
|
| Q |
223 |
cactgcaacttcagtctcttactataaacactttcagatgattttacacacatatattaagtaatctattgaaatttgtatattaataatgtcttagttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925940 |
cactgcaacttcagtctcttactataaacactttcagatgattttacacacatatattaagtaatctattgaaatttgtatattaataatgtcttagttg |
42926039 |
T |
|
| Q |
323 |
tatagttgaaaaatgacaccataactaggtatgttgttttggtaataattatctagtactttagaaaatagttttaaaagccagttattttctatctaac |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926040 |
tatagttgaaaaatgacaccataactaggtatgttgttttggtaataattatctagtactttagaaaatagttttaaaagccagttattttctatctaac |
42926139 |
T |
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| Q |
423 |
gagacatatacagacattataagtaa---tattgtactacactttctagtacagtataatc |
480 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42926140 |
gagacatatatagacattataagtaatactattgtactacactttctagtacagtataatc |
42926200 |
T |
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