View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_high_22 (Length: 244)
Name: NF19713_high_22
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48085008 - 48084783
Alignment:
| Q |
1 |
cattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatgcagct |
100 |
Q |
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| T |
48085008 |
cattctatatgcatcagcagcaacaaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaggatgcagct |
48084909 |
T |
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| Q |
101 |
ctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctac |
200 |
Q |
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| T |
48084908 |
ctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctac |
48084809 |
T |
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| Q |
201 |
gagctcccaaaccataaagcctctgc |
226 |
Q |
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| T |
48084808 |
gagctcccaaatcataaagcctctgc |
48084783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 35376574 - 35376779
Alignment:
| Q |
11 |
gcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatgcagctctctcaagtt |
110 |
Q |
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| T |
35376574 |
gcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgagtt |
35376673 |
T |
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| Q |
111 |
ccacactacactgaccatttggacctcctctcatagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaa |
210 |
Q |
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| T |
35376674 |
ccacatcacaatcaccatttctacttc---tcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaagaaccttacgacctcccaa |
35376770 |
T |
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| Q |
211 |
accataaag |
219 |
Q |
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| T |
35376771 |
atcataaag |
35376779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 35358140 - 35358208
Alignment:
| Q |
158 |
ggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaaaccataaagcctctgc |
226 |
Q |
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| T |
35358140 |
ggtgcacaccccattggtcctgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgc |
35358208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 35354413 - 35354477
Alignment:
| Q |
143 |
atagctaattctgctggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcc |
207 |
Q |
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| T |
35354413 |
atagctaatgctgctggagcacaacccattggacctgttcctgacaccagaaccctacgtgctcc |
35354477 |
T |
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