View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19713_high_23 (Length: 234)
Name: NF19713_high_23
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42119969 - 42120189
Alignment:
| Q |
1 |
caaaagaaatatcaactttaagaaatctaatatatgcatatattattattacatacaataaccgcgttaaggagcacttggacgtacgaaagggtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
42119969 |
caaaagaaatatcaactttaagaaatctaatatatgcatatattattattacatacaataaccgcattaaggaggacttggacgtacgaaagggtttttg |
42120068 |
T |
|
| Q |
101 |
gcctttgtttttcagcaattatatatattccgtttaattaattttttctatatgtaataaggtatagttgctttgcctttggtttcttaatggtggggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42120069 |
gcctttgtttttcagcaattatatatattccgtttaattaattttttctatatgtaataaggtatagttgctttgcctttggtttcttaatggtggggtt |
42120168 |
T |
|
| Q |
201 |
ttattatgattatgatgataa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42120169 |
ttattatgattatgatgataa |
42120189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University