View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_high_9 (Length: 379)
Name: NF19713_high_9
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 31389467 - 31389838
Alignment:
| Q |
9 |
agcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaataca |
108 |
Q |
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| T |
31389467 |
agcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaataca |
31389566 |
T |
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| Q |
109 |
atatcaattacaaatatcatacattttttaaggacaagtgt-gtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtctt |
207 |
Q |
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| T |
31389567 |
atatcaattacaaatatcatacattttttaaggacaagtgttgtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtctt |
31389666 |
T |
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| Q |
208 |
caacaattcttgcaattgtccatgactccattattgctcctcgacaaacaactaatcattacaccctatggattaaatgagagttgccaatcttctttga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31389667 |
caacaattcttgcaattgtccatgactccattattgctccccgacaaacaactaattattacaccctatggattaaatgagagttgccaatcttctttca |
31389766 |
T |
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| Q |
308 |
aaactagaaccatttctataaatacttatggtattctagaagcctctctttgtaattgtctcgaacgacatc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389767 |
aaactagaaccatttctataaatacttatggtattctagaagcctctctttgtaattgtctcgaacgacatc |
31389838 |
T |
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