View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_10 (Length: 414)
Name: NF19713_low_10
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 41276754 - 41276369
Alignment:
| Q |
20 |
actccttcacatgaaaccatcaaccgaaggcccaacaaatgtccaagcccagcccattcacaaaaaagaaatttctcacgaagataaagataaatgggcc |
119 |
Q |
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| T |
41276754 |
actccttcacatgaaaccatcaaccgaaggcccaacaaatgtccaagcccagcccattcacaaaaaagaaatttctcacgaagataaagataaatgggcc |
41276655 |
T |
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| Q |
120 |
aactgggccacaaaattgaaaagctcaaatcttctcccggcaataaagtactctttcgcattgggtctatcagtattcatgggcttattgtatagcaaag |
219 |
Q |
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| T |
41276654 |
aattgggccacaaaattgaaaagctcaaatcttctcccggcaataaagtactctttcgcattgggtctatcagtattcatgggcttattgtatagcaaag |
41276555 |
T |
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| Q |
220 |
aaagcggtttctggtctgggcttccggtggccgtaagctacgtttcaggtagagaagcgactttccgggccgcaaatgttaaagccctaggaacggtgat |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
41276554 |
aaagtggtttctggtctgggcttccggtggccgtaagctacgtttcaggtagagaagcgacttttcgggccgcaaatgttaaagcccaaggaacggtgat |
41276455 |
T |
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| Q |
320 |
cggaactgtgtacggtgtgttgggttgtttcgtgtttaatagattattgtcaattagattcttgtctttgcttccatggttcattt |
405 |
Q |
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| T |
41276454 |
cggaactgtgtacggtgtgttgggttgtttcgtgtttaatagattattgtcaattagattcttgtctttgcttccatggttcattt |
41276369 |
T |
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