View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_13 (Length: 352)
Name: NF19713_low_13
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 334
Target Start/End: Original strand, 31301120 - 31301450
Alignment:
| Q |
4 |
ggaaagtgcagaatgacaaaatctttaatcggaaaattcatgtggtgggagagttaatagaggagattaaagtattgtcgtggaggtggatgttgagtag |
103 |
Q |
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| T |
31301120 |
ggaaagcgcagaatgacaaaatctttaatcggaaaattcatgtggtgggagagttaatagaggagattaaagtattgtcgtggaggtggatgttgagtag |
31301219 |
T |
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| Q |
104 |
gacgcaactaccggtttgccttttttatgagaggtgttgggatcctatttcgtgccttgaaaggataggaaggaggtagtgtttttgcggctgctatgtg |
203 |
Q |
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| T |
31301220 |
gacacaactaccggtttgccttttttatgagtggtgttgggatcctatttcgtgccttaaaagggtaggaaggaggtagtgtttttgcggctgctgtgtg |
31301319 |
T |
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| Q |
204 |
tgctggttagtgttgtttcaggtggtgctgttaaaccgcagttgttggggtgcctggcctgtttctgcttctgttatgcaactgttgtattgatgcaggt |
303 |
Q |
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| T |
31301320 |
tgctggttagtgttgtttctggtggtgctgttaaaccgcagctgttggggtgcctggcctctttctgcttctgttatgctcctgctgtattgctgcaggt |
31301419 |
T |
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| Q |
304 |
tttttgttctgcagggactggtgtgcgcatg |
334 |
Q |
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| T |
31301420 |
tttttgttatgcagggactggtgtgcgcatg |
31301450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 37748039 - 37747946
Alignment:
| Q |
63 |
gaggagattaaagtattgtcgtggaggtggatgttgagtaggacgcaactaccggtttgccttttttatgagaggtgttgggatcctatttcgt |
156 |
Q |
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| T |
37748039 |
gaggagattaaagtattgtcgtgaaggtggattttgagtcggacaaaacttaagatttgtctcttttatgagtggagttgggatccaatttcgt |
37747946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 23173876 - 23173803
Alignment:
| Q |
94 |
tgttgagtaggacgcaactaccggtttgccttttttatgagaggtgttgggatcctatttcgtgccttgaaagg |
167 |
Q |
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| T |
23173876 |
tgttgagtaggacgcaatccccgatttgtctattttatgagtggaattgggaccctatttcgtgccttgtaagg |
23173803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 13854455 - 13854531
Alignment:
| Q |
67 |
agattaaagtattgtcgtggaggtggatgttgagtaggacgcaactaccggtttgccttttttatgagaggtgttgg |
143 |
Q |
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| T |
13854455 |
agattaaagttttgtcgtggagatggatgttgtataggactaaaattccggcttgtcttttttatgaatggtgttgg |
13854531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 21648689 - 21648633
Alignment:
| Q |
75 |
gtattgtcgtggaggtggatgttgagtaggacgcaactaccggtttgccttttttat |
131 |
Q |
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| T |
21648689 |
gtattgtcttggaggtggatcttgagtaggacgcatattccgatttgtcttttttat |
21648633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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