View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_2 (Length: 540)
Name: NF19713_low_2
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47788440 - 47788787
Alignment:
| Q |
1 |
ttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaataggattggtgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47788440 |
ttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgtagcaataggattggtgc |
47788539 |
T |
|
| Q |
101 |
tagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccatgatcatcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788540 |
tagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccatgatcatcaaca |
47788639 |
T |
|
| Q |
201 |
cttttctcgaag--gtaattgtaaggtgagagtgtctctcttcatnnnnnnnnttcaactttatctcttttgagccaatacactctctcatgcccatgat |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47788640 |
cttttctcgaaggtgtaattgtaaggtgagagtgtctctcttcataaaaaaaattcaactttatctcttttgagccaatatactctctcatgcccatgat |
47788739 |
T |
|
| Q |
299 |
tattggatttcgtcttttggtaatttcgtgggtgattcaaatgaataa |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788740 |
tattggatttcgtcttttggtaatttcgtgggtgattcaaatgaataa |
47788787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47782253 - 47782492
Alignment:
| Q |
1 |
ttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaataggattggtgc |
100 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||| | ||||||||||| | |||| |
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| T |
47782253 |
ttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaaga---tttagcaataggagtagtgc |
47782349 |
T |
|
| Q |
101 |
tagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccatgatcatcaaca |
200 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| || |||||||||||| ||||| |
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| T |
47782350 |
tagaatgattagaccaagctgttatttgaggtttgcaacttcatatcaattctatcaacccaaaccaaaactggcttcccaactcccatgatcaacaaca |
47782449 |
T |
|
| Q |
201 |
cttttctcgaaggtaattgtaaggtgagagtgtctctcttcat |
243 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47782450 |
cttttctcgaaggtaattgtaaggtgagaggatctctcttcat |
47782492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 393 - 524
Target Start/End: Original strand, 47788831 - 47788962
Alignment:
| Q |
393 |
cttagtaaatagacttctaaaatgactaatgtcattctttattaattctgagttaaaattcattttgataattcacaatttttctatagactaattttag |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788831 |
cttagtaaatagacttctaaaatgactaatgtcattctttattaattctgagttaaaattcattttgataattcacaatttttctatagactaattttag |
47788930 |
T |
|
| Q |
493 |
tcttgacaaaaataaaactcaaagcggatcct |
524 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47788931 |
tcttgacaaaaataaaactcaaagcggatcct |
47788962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 47778322 - 47778484
Alignment:
| Q |
5 |
tcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaataggattggtgctaga |
104 |
Q |
| |
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||||||||| ||||| || ||||||||||| |||| |||| ||| | | || ||| | ||| |||||||| |||||| |||||||||||||||||| |
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| T |
47778322 |
tcagtgtacacctgatttatctggtccacaatgtgccaattgcttgaatgagtctattacagaaatttcaagatgttgtaaaaataggattggtgctaga |
47778421 |
T |
|
| Q |
105 |
attattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagca |
167 |
Q |
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||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
47778422 |
attgttagacctagctgtaatttgaggtttgaaacttcatttcaattctatcaaactatagca |
47778484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 47811755 - 47811918
Alignment:
| Q |
1 |
ttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaataggattggtgc |
100 |
Q |
| |
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||||||||||||| ||||| ||||| | | ||||||||||||| |||||| | |||| ||||||||||| ||| | ||||| ||| | |||||| |
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| T |
47811755 |
ttgttcagtgtacacctgatttgtcggtttcacagtgtgatgactgtttgaatgaatctattgctgaagtcccaaaatattgtaccaacaagattggctg |
47811854 |
T |
|
| Q |
101 |
tagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatc-aacctaaagc |
166 |
Q |
| |
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|||| || ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
47811855 |
tagagtttttagagcaagctgtaatttgaggtttgaaact---taccaattctatcaaacctaaagc |
47811918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 6522038 - 6522141
Alignment:
| Q |
36 |
tgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaataggattggtgctagaattattagaccaagctgtaatttgaggtttg |
135 |
Q |
| |
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||||||||||||||| ||||||| || ||| |||||| |||||| ||||||| | |||||||||||| ||||||| || ||||||||||| | || |
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| T |
6522038 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatg |
6522137 |
T |
|
| Q |
136 |
aaac |
139 |
Q |
| |
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|||| |
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| T |
6522138 |
aaac |
6522141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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