View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19713_low_20 (Length: 264)

Name: NF19713_low_20
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19713_low_20
NF19713_low_20
[»] chr2 (2 HSPs)
chr2 (11-249)||(4239009-4239247)
chr2 (60-97)||(20970637-20970674)
[»] chr6 (5 HSPs)
chr6 (42-166)||(15501338-15501462)
chr6 (62-175)||(9994266-9994379)
chr6 (63-103)||(34312077-34312117)
chr6 (63-103)||(4502531-4502571)
chr6 (63-103)||(15826083-15826123)
[»] chr1 (1 HSPs)
chr1 (40-113)||(46655258-46655331)
[»] chr4 (2 HSPs)
chr4 (63-166)||(43577839-43577942)
chr4 (40-112)||(8165286-8165358)
[»] scaffold1049 (1 HSPs)
scaffold1049 (63-103)||(197-237)
[»] chr8 (3 HSPs)
chr8 (63-163)||(15297172-15297272)
chr8 (63-163)||(15477541-15477641)
chr8 (60-100)||(28392565-28392605)
[»] chr7 (2 HSPs)
chr7 (63-103)||(26083081-26083121)
chr7 (63-103)||(26106868-26106908)
[»] chr5 (2 HSPs)
chr5 (63-103)||(548670-548710)
chr5 (63-103)||(30279082-30279122)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 4239247 - 4239009
Alignment:
Q  11 ttatactgtataataaatttgcactacatatatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4239247 ttatactgtataataaatttgcactacatatatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagagac 4239148  T
Q  111 aaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaagttgccgacatttttactagaccattgcaccatgggcctttcaacactc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239147 aaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaagttgccgacatttttactagaccattgcaccatgggcctttcaacactc 4239048  T
Q  211 tacaaatcaagcttggaacaaccagcatccattctagct 249  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  4239047 tacaaatcaagcttggaacaatcatcatccattctagct 4239009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 20970674 - 20970637
Alignment:
Q  60 ttccatgagagaacaaagcacatagaaattgattgtca 97  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  20970674 ttccatgagagaacaaaacacttagaaattgattgtca 20970637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 15501338 - 15501462
Alignment:
Q  42 atagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctac 141  Q
    |||||||||||||||| |||  |||||||||||||||| ||||||| |||||||||||| ||||| || |||||| ||||| |||||||||| |||||||    
T  15501338 atagttgctaaccctgcattttatgagagaacaaagcatatagaaaatgattgtcatgtggttagagataaagtgaaggcatgactaattcatctgctac 15501437  T
Q  142 cagtatcctcaaaagaacaagttgc 166  Q
      ||||||||||||||||| |||||    
T  15501438 ttgtatcctcaaaagaacatgttgc 15501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 9994266 - 9994379
Alignment:
Q  62 ccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaa 161  Q
    |||||| ||||| || ||||| |||||||| ||||||||  | || ||||||||||||| |||| |||||||| |||||||| ||||||||||||| |||    
T  9994266 ccatgaaagaactaaacacattgaaattgactgtcatgtaataagggacaaagtgcaggtaggagtaattcacttgctaccaatatcctcaaaagaccaa 9994365  T
Q  162 gttgccgacatttt 175  Q
    ||||| || |||||    
T  9994366 gttgctgatatttt 9994379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 34312077 - 34312117
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  34312077 catgagagaacaaaacacattgaaattgattgtcatgttgt 34312117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 4502531 - 4502571
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  4502531 catgagagaacaaaacacattgagattgattgtcatgttgt 4502571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 15826083 - 15826123
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  15826083 catgagagaacaaaacacattgagattgattgtcatgttgt 15826123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 46655258 - 46655331
Alignment:
Q  40 atatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaa 113  Q
    |||||| |||||||||||| ||||||||||| |||||||| || || |||||||||||||| || || ||||||    
T  46655258 atatagctgctaaccctgttttccatgagaggacaaagcatattgagattgattgtcatgtagtaagagacaaa 46655331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 43577839 - 43577942
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 162  Q
    ||||| |||||||| |||||||| || || |||||||| ||||| |||||||| || | |||  | |||||  | ||||||||||| ||||| |||||||    
T  43577839 catgaaagaacaaaacacatagagatggactgtcatgtagttagagacaaagtacaagaaggcatcattcatttactaccagtatcatcaaaggaacaag 43577938  T
Q  163 ttgc 166  Q
    ||||    
T  43577939 ttgc 43577942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 8165286 - 8165358
Alignment:
Q  40 atatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaa 112  Q
    |||||||||| || || || |||||||| || ||||| || ||||| ||||||||||||||||| || |||||    
T  8165286 atatagttgcaaatcccgtcttccatgaaaggacaaaacatatagagattgattgtcatgttgtgagagacaa 8165358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 237 - 197
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  237 catgagagaacaaaacacattgatattgattgtcatgttgt 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 15297172 - 15297272
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 162  Q
    ||||||||||| ||||||||||| || || |||||||| ||||| ||| ||||||| ||| |  | |||||| | |||||||| || |||||  ||||||    
T  15297172 catgagagaaccaagcacatagagatggactgtcatgtggttagagaccaagtgcaagcatgcatcattcacttactaccagtctcatcaaagaaacaag 15297271  T
Q  163 t 163  Q
    |    
T  15297272 t 15297272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 15477541 - 15477641
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 162  Q
    ||||||||||| ||||||||||| || || |||||||| ||||| ||| ||||||| ||| |  | |||||| | |||||||| || |||||  ||||||    
T  15477541 catgagagaaccaagcacatagagatggactgtcatgtggttagagaccaagtgcaagcatgcatcattcacttactaccagtctcatcaaagaaacaag 15477640  T
Q  163 t 163  Q
    |    
T  15477641 t 15477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 28392605 - 28392565
Alignment:
Q  60 ttccatgagagaacaaagcacatagaaattgattgtcatgt 100  Q
    ||||||||||||||||||||  ||||||| |||||||||||    
T  28392605 ttccatgagagaacaaagcatgtagaaatcgattgtcatgt 28392565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 26083121 - 26083081
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  26083121 catgagagaacaaaacacattgagattgattgtcatgttgt 26083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 26106908 - 26106868
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  26106908 catgagagaacaaaacacattgagattgattgtcatgttgt 26106868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 548710 - 548670
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  548710 catgagagaacaaaacacattgagattgattgtcatgttgt 548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 30279122 - 30279082
Alignment:
Q  63 catgagagaacaaagcacatagaaattgattgtcatgttgt 103  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  30279122 catgagagaacaaaacacattgagattgattgtcatgttgt 30279082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University