View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_26 (Length: 244)
Name: NF19713_low_26
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1811325 - 1811082
Alignment:
| Q |
1 |
aatatcaaaattattaagcatttaatagtacagctaatatttgcaaaagataaaatgaccaagagtgactaatagatgatcctttccttgcaaattataa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811325 |
aataacaaaattattaagcatttaatagtacagctaatatttgcaaaagataaaatgaccaagagtgactaatagatgatcctttccttgcaaattataa |
1811226 |
T |
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| Q |
101 |
agtgggagaaaaaggggaagaggagaacgcatgtacctgccattgcatttctggcacatgtacttcctctctccttcgtgcatcctaattgctcctaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
1811225 |
agtgggagaaaaaggggaagaggagaacgcatgtacctgccattgcatttctggcacatgtacttcctctctccttcgtgcatcttaattgctcctgacc |
1811126 |
T |
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| Q |
201 |
tgattactatccctttggcggtgagaagaatccctcggtgctgc |
244 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1811125 |
tgattactatccctttgacagtgagaagaatccctcggtgctgc |
1811082 |
T |
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