View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_28 (Length: 230)
Name: NF19713_low_28
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 26448713 - 26448870
Alignment:
| Q |
8 |
ataatactaactttgtcacaccaaaaattacatagcacgtcatttcgcccaaaataacaagaagttatacataaagggaaaagaataaagactttaccga |
107 |
Q |
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| T |
26448713 |
ataatactagctttgtcacaccaaaaattacatagcacgtcatttcgcccaaaataacaagaaattatacacaaagggaaaagaataaagactttaccaa |
26448812 |
T |
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| Q |
108 |
atggttgattctcattatcataaattaaaatgaaagtagtaacatgaaagtgaagcac |
165 |
Q |
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| T |
26448813 |
atggttgattctcattatcataaattaaaatgaaagtagtaacatggaagggaagcac |
26448870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 26448922 - 26448955
Alignment:
| Q |
181 |
ggtcaagaagcacaaattttttatgtgacaattt |
214 |
Q |
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| T |
26448922 |
ggtcaagaagcacaaattttttatgtgacaattt |
26448955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 26423903 - 26423933
Alignment:
| Q |
109 |
tggttgattctcattatcataaattaaaatg |
139 |
Q |
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| T |
26423903 |
tggttgattctcattatcataaattaaaatg |
26423933 |
T |
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