View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_33 (Length: 218)
Name: NF19713_low_33
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 26325869 - 26326044
Alignment:
| Q |
20 |
atcatcctggtattcaacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatt |
119 |
Q |
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| T |
26325869 |
atcatcctggtattcaacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatt |
26325968 |
T |
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| Q |
120 |
tggaatgaataactttgaagcgggtagttcatcacgaacgaatgagaatcaacaacagaccgaagcgttggcactt |
195 |
Q |
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| T |
26325969 |
tggaatgaataactttgaagcgggtagttcatcacgaacgaatgagaatcaacaacagactgaagcgttggcactt |
26326044 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 48320120 - 48320064
Alignment:
| Q |
34 |
caacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaa |
90 |
Q |
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| T |
48320120 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaa |
48320064 |
T |
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