View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_4 (Length: 484)
Name: NF19713_low_4
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 3084211 - 3083743
Alignment:
| Q |
1 |
agtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
3084211 |
agtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaa |
3084112 |
T |
|
| Q |
101 |
caggccttgaatttgatctttctgtttaatatcatacaccatgcattctcaaaataattattacatggaccaagtcaccaaaataaataggaaaagagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3084111 |
caggccttgaatttgatctttctgtttaatatcatacaccatgcattcacaaaataattattacatggaccaagtcaccaaaataaatgggaaaagagtg |
3084012 |
T |
|
| Q |
201 |
aggaaattaacattttagtactcatatttagtcattcaaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084011 |
aggaaattaacattttagtactcatatttagtcattcgaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaa |
3083912 |
T |
|
| Q |
301 |
aatttagcaaatttaagagatatcttggtgaaggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083911 |
aatttagcaaatttaagagatatcttggtgaaggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaa |
3083812 |
T |
|
| Q |
401 |
atttctggactcttataatatggaagaatggaatattcatttactagtaaaagaatgcacattgcttat |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083811 |
atttctggactcttataatatggaagaatggaatattcatttactagtaaaagaatgcacattgcttat |
3083743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3093091 - 3092903
Alignment:
| Q |
1 |
agtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
3093091 |
agtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaa |
3092992 |
T |
|
| Q |
101 |
caggccttgaatttgatctttctgtttaatatcatacaccatgcattctcaaaataattattacatggaccaagtcaccaaaataaata |
189 |
Q |
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||| ||||| || ||| |||||| ||||||| ||| ||| |||| || ||| || |||| ||||||| || || ||||||||||| |
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| T |
3092991 |
ttggctttgaacttaatccacctgtttgatatcatgcacaatgtattcacataatcatcattaaatggaccgagacaacaaaataaata |
3092903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
432 |
aatattcatttactagtaaaagaatgcacattgc |
465 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
363 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
359 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
403 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
359 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
403 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || ||||||||| |
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|
| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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