View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19713_low_5 (Length: 484)
Name: NF19713_low_5
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 53562552 - 53562109
Alignment:
| Q |
17 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacaacctcaatgaacacagccagacaccacgcagcagcagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53562552 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacagcctcaatgaacacagccagacaccacgcagcagcagc |
53562453 |
T |
|
| Q |
117 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53562452 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
53562353 |
T |
|
| Q |
217 |
cctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
316 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53562352 |
cctccaagacaaaaccttgactg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
53562257 |
T |
|
| Q |
317 |
acagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataa |
416 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53562256 |
acagcatgccaaataattctaacacctttacgggtcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataa |
53562157 |
T |
|
| Q |
417 |
aattaaagtccaaccattccatgatcttacaccaaaccaccttcaccc |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53562156 |
aattaaagtccaaccattccatgatcttacaccaaaccaccttcaccc |
53562109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 136 - 438
Target Start/End: Original strand, 38185268 - 38185570
Alignment:
| Q |
136 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
235 |
Q |
| |
|
|||||||| ||| || ||||| |||||||| |||||||||| |||||| | |||||||| |||| ||| || |||| ||||||||| | ||| ||||| |
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|
| T |
38185268 |
tcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacacctta |
38185367 |
T |
|
| Q |
236 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
335 |
Q |
| |
|
| |||||||| || ||||| || | || |||||||| ||| || | || ||||| ||||||||||| |||||||| | ||||||||||||| | |
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|
| T |
38185368 |
atagattccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataagcc |
38185467 |
T |
|
| Q |
336 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
435 |
Q |
| |
|
|| || |||| ||||| ||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || |
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|
| T |
38185468 |
tcactcccttacaaatctttttattataaaccgctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactc |
38185567 |
T |
|
| Q |
436 |
cat |
438 |
Q |
| |
|
||| |
|
|
| T |
38185568 |
cat |
38185570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 452
Target Start/End: Original strand, 34821223 - 34821540
Alignment:
| Q |
136 |
tcaccgcatcaaacag-tccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt |
234 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||||| |||||| | | ||||| | |||| || |||| ||||||||| |||||||||| |
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|
| T |
34821223 |
tcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacctt |
34821322 |
T |
|
| Q |
235 |
gacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataatt |
334 |
Q |
| |
|
| ||||||||||| |||||| || | ||||||||| || ||||| | || ||||||||||||||||| |||||||| | || |||||||||| |
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|
| T |
34821323 |
tattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagc |
34821422 |
T |
|
| Q |
335 |
ccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccatt |
434 |
Q |
| |
|
| || || ||||| ||||| ||||| ||| || ||||||||||| | ||||| ||||| | |||||| || ||||||| ||||| ||| ||||| | |
|
|
| T |
34821423 |
ctcactcccttacgaatctttttattgtgaaccgcaccattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccact |
34821522 |
T |
|
| Q |
435 |
ccatgatcttacaccaaa |
452 |
Q |
| |
|
|||||| ||||| ||||| |
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|
| T |
34821523 |
ccatgagcttactccaaa |
34821540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 136 - 450
Target Start/End: Complemental strand, 4903993 - 4903679
Alignment:
| Q |
136 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
235 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||| || ||||||||||| | | || || || |||||| ||| ||||||||||| ||||| |
|
|
| T |
4903993 |
tcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacctta |
4903894 |
T |
|
| Q |
236 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
335 |
Q |
| |
|
|||||||||||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | || |
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|
| T |
4903893 |
acagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatc |
4903794 |
T |
|
| Q |
336 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
435 |
Q |
| |
|
| |||| | || | ||| || || |||| | ||||||||||||| ||||| |||||| ||||| || ||||||| ||||||||| |||||||| || |
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|
| T |
4903793 |
taccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaaaaattaaattccaaccactc |
4903694 |
T |
|
| Q |
436 |
catgatcttacacca |
450 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
4903693 |
cataagcttacacca |
4903679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 438
Target Start/End: Complemental strand, 1557447 - 1557167
Alignment:
| Q |
158 |
ggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttgacagattccaacagatcctcaa |
257 |
Q |
| |
|
|||||||| |||| ||||| |||||| | || ||||| | ||||| ||||||| ||||||||| ||||| ||||| | |||||||| ||| | |||| |
|
|
| T |
1557447 |
ggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaataccttaattgattccaagagagcttcaa |
1557348 |
T |
|
| Q |
258 |
cctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattccaacacctttacggatcttatt |
357 |
Q |
| |
|
|| | | ||||||||||| | |||| ||||| |||||||| || ||||||| ||||||||||||| | ||||| || || ||||| || |
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|
| T |
1557347 |
ggtctaaagtcgcattattgaacacaatgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatcttttt |
1557248 |
T |
|
| Q |
358 |
atttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
438 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| |||||| ||||| || || |||| |||||||||||||| ||| ||||| |
|
|
| T |
1557247 |
attgacaacagctccaatccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccat |
1557167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 450
Target Start/End: Original strand, 22153564 - 22153878
Alignment:
| Q |
136 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
235 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
|
|
| T |
22153564 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22153663 |
T |
|
| Q |
236 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
335 |
Q |
| |
|
| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| | ||||||||||| | || |
|
|
| T |
22153664 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc |
22153763 |
T |
|
| Q |
336 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
435 |
Q |
| |
|
| |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| ||||||||| |||||||| || |
|
|
| T |
22153764 |
taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc |
22153863 |
T |
|
| Q |
436 |
catgatcttacacca |
450 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
22153864 |
cataagcttacacca |
22153878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 450
Target Start/End: Original strand, 22209479 - 22209793
Alignment:
| Q |
136 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
235 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
|
|
| T |
22209479 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22209578 |
T |
|
| Q |
236 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
335 |
Q |
| |
|
| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| | ||||||||||| | || |
|
|
| T |
22209579 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc |
22209678 |
T |
|
| Q |
336 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
435 |
Q |
| |
|
| |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| ||||||||| |||||||| || |
|
|
| T |
22209679 |
taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc |
22209778 |
T |
|
| Q |
436 |
catgatcttacacca |
450 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
22209779 |
cataagcttacacca |
22209793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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