View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_6 (Length: 461)
Name: NF19713_low_6
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 40650733 - 40650300
Alignment:
| Q |
13 |
aatatttgtgtccagaaaataggtaattcccatggcaccatgattgttgcaggcttgattacatggtcactgtttacagcacttgagattttatcattgc |
112 |
Q |
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| T |
40650733 |
aatatttgtgcccagaaaataggtaattcccatggcaccatgattgttgcaggcttgattacatggtgactgtttacagcacttgagattttatcattgc |
40650634 |
T |
|
| Q |
113 |
atattgtttttgttttctgtaggatatttaatgtgcatctttgaagaaaaacttgaagaagccactctcgaaaaacttatagaatgggaatacactgtat |
212 |
Q |
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| T |
40650633 |
atattgtttttgttttctgtaggatatttaatgtgcatctttgaagaaaaacttgaagaagccactctcgagaaacttatagaatgggaatacactgtat |
40650534 |
T |
|
| Q |
213 |
gtttgtgtttgcattttgttcaagtaatttattctaatcgatatattctattttgatagtaatcatttcaaatatagtttggtgatgcagatggagagac |
312 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650533 |
gttggtgtttgcattttattcaagtaatttattctaatcgatatattctattttgatggtaatcatttcaaatatagtttggtgatgcagatggagagac |
40650434 |
T |
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| Q |
313 |
gaaaagatacttttatcgtacgccaaagacacgggaattagacaatcttctaggagatatctatcataaaattctaggtgttaaatcattttttatattt |
412 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650433 |
gaaaagatacttttatcgtatgccaaagacacgggaattagacaatcttctaggagatatctatcataaaattctaggtgttaaatcattttttatattt |
40650334 |
T |
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| Q |
413 |
ccctgatatcttttcacttttcgggggttctatt |
446 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40650333 |
ccctgatatcttttcacttttcgggggttctatt |
40650300 |
T |
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