View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19713_low_9 (Length: 439)
Name: NF19713_low_9
Description: NF19713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19713_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 26324836 - 26325257
Alignment:
| Q |
17 |
atgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccacgtt |
116 |
Q |
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| T |
26324836 |
atgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccacgtt |
26324935 |
T |
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| Q |
117 |
tcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctcattc |
216 |
Q |
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| T |
26324936 |
tcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctcattc |
26325035 |
T |
|
| Q |
217 |
atcaaattctttcattctctttttgtttcatcaaacggtttttatccaacttttatttctggcggcagcgacgcttttatttagcgccgctactgccatc |
316 |
Q |
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| T |
26325036 |
atcaaattctttcattctctttttgtttcatcaaacggtttttatccaactttcatttctggcggcagcgacgcttttatttagcgccgctactgccatc |
26325135 |
T |
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| Q |
317 |
accatcattccataaacaatttttctc-aaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaagatgcaacgtttaaatttaatg |
415 |
Q |
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| T |
26325136 |
accatcattccataaacaatttttctcaaaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaaggtgcaacgtttaaatttgatg |
26325235 |
T |
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| Q |
416 |
atgatgatgccattgacccaaa |
437 |
Q |
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| T |
26325236 |
atgatgatgccattgacccaaa |
26325257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 48320906 - 48320850
Alignment:
| Q |
129 |
aactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctcttt |
186 |
Q |
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| T |
48320906 |
aactgaaacgacttcatgca-ttttcaaacggtaattaaccgccaattgcacctcttt |
48320850 |
T |
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