View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19714_high_3 (Length: 345)

Name: NF19714_high_3
Description: NF19714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19714_high_3
NF19714_high_3
[»] chr2 (3 HSPs)
chr2 (109-345)||(39128251-39128487)
chr2 (13-56)||(39128166-39128209)
chr2 (302-345)||(39128564-39128607)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 109 - 345
Target Start/End: Original strand, 39128251 - 39128487
Alignment:
Q  109 aaacatggtcactaggtgtttagtatttgggtttgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcatcatgtattctagctaaaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39128251 aaacatggtcactaggtgtttagtatttgggtttgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcataatgtattctagctaaaa 39128350  T
Q  209 gaaccacatttcttatcttttacctatatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgc 308  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39128351 gaatcacatttcttatcttttacctatatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgc 39128450  T
Q  309 tttgtgtcaatacaatagtatcactgtgtttatgttt 345  Q
    | ||||||||||||||||||||||| |||||||||||    
T  39128451 tctgtgtcaatacaatagtatcactttgtttatgttt 39128487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 39128166 - 39128209
Alignment:
Q  13 atgtatcttcatttttgtaaccaccaaacaacattgttaccagg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39128166 atgtatcttcatttttgtaaccaccaaacaacattgttaccagg 39128209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 39128564 - 39128607
Alignment:
Q  302 tttatgctttgtgtcaatacaatagtatcactgtgtttatgttt 345  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  39128564 tttatgctttgtgtcaacacaatagtatcactgtgtttatgttt 39128607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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