View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19714_high_5 (Length: 305)
Name: NF19714_high_5
Description: NF19714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19714_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 32987187 - 32987467
Alignment:
| Q |
13 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
112 |
Q |
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| T |
32987187 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
32987286 |
T |
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| Q |
113 |
tcccacttccaccggccaacatggctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32987287 |
tcccacttccaccggccaacatagctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
32987386 |
T |
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| Q |
213 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacatcaggccaccattagggaactttggatg |
293 |
Q |
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| T |
32987387 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacattaggccaccattagggaactttggatg |
32987467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 32957823 - 32958103
Alignment:
| Q |
13 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
32957823 |
aatatatcatcctcgcttcgattagcatacacaacatatatttcagttagatccttcagatcttttagaatcgcttgtaccacttggtaaatcggtgtta |
32957922 |
T |
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| Q |
113 |
tcccacttccaccggccaacatggctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
212 |
Q |
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|||| |||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| | ||| |||||||||||| || ||||||||||| ||||| |
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| T |
32957923 |
tccccgttcctccggccaacatagctaacctctttgcaaacttgtgtttaccatgaacaagaaaatttcctctaccaatgtattctatgtgtcccaatgg |
32958022 |
T |
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| Q |
213 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacatcaggccaccattagggaactttggatg |
293 |
Q |
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||| ||||||||||| | || |||||||||| |||||| |||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
32958023 |
accctttatatccaaaatagaaccaataggcaatgaatctaagtgttgagacattaggccaccactagggaattttggatg |
32958103 |
T |
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